Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IQS23_RS03165 Genome accession   NZ_CP063476
Coordinates   678295..679722 (-) Length   475 a.a.
NCBI ID   WP_072617301.1    Uniprot ID   -
Organism   Escherichia coli strain EM10-18-28     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 673295..684722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQS23_RS03135 (IQS23_03135) yeeZ 673350..674174 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  IQS23_RS03140 (IQS23_03140) yeeY 674220..675149 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  IQS23_RS03145 (IQS23_03145) yoeI 675364..675426 (+) 63 WP_010723108.1 membrane protein YoeI -
  IQS23_RS03150 (IQS23_03150) plaP 675416..676774 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IQS23_RS03155 (IQS23_03155) tsuA 676953..678011 (+) 1059 WP_000492315.1 thiosulfate utilization transporter TsuA/YeeE -
  IQS23_RS03160 (IQS23_03160) tsuB 678025..678252 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IQS23_RS03165 (IQS23_03165) sbcB 678295..679722 (-) 1428 WP_072617301.1 exodeoxyribonuclease I Machinery gene
  IQS23_RS03170 (IQS23_03170) dacD 679931..681097 (+) 1167 WP_042031746.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  IQS23_RS03175 (IQS23_03175) sbmC 681216..681689 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  IQS23_RS03180 (IQS23_03180) yeeA 681887..682945 (+) 1059 WP_001200891.1 FUSC family protein -
  IQS23_RS03185 (IQS23_03185) tmaR 683117..683446 (+) 330 WP_000450409.1 DUF496 family protein -
  IQS23_RS03190 (IQS23_03190) - 683547..683729 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  IQS23_RS03195 (IQS23_03195) - 683801..683929 (+) 129 Protein_631 transposase domain-containing protein -
  IQS23_RS03200 (IQS23_03200) - 684218..684298 (-) 81 Protein_632 hypothetical protein -
  IQS23_RS03205 (IQS23_03205) yeeW 684344..684538 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6070

>NTDB_id=439788 IQS23_RS03165 WP_072617301.1 678295..679722(-) (sbcB) [Escherichia coli strain EM10-18-28]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYIFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=439788 IQS23_RS03165 WP_072617301.1 678295..679722(-) (sbcB) [Escherichia coli strain EM10-18-28]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATATCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCGCTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579