Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HHA33_RS18865 Genome accession   NZ_CP051548
Coordinates   3938204..3938824 (-) Length   206 a.a.
NCBI ID   WP_169039627.1    Uniprot ID   -
Organism   Phytobacter diazotrophicus strain UAEU22     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3933204..3943824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHA33_RS18850 (HHA33_18855) helD 3933437..3935491 (-) 2055 WP_039078591.1 DNA helicase IV -
  HHA33_RS18855 (HHA33_18860) - 3935615..3936061 (+) 447 WP_039078590.1 YccF domain-containing protein -
  HHA33_RS18860 (HHA33_18865) yccS 3936078..3938207 (+) 2130 WP_107224517.1 YccS family putative transporter -
  HHA33_RS18865 (HHA33_18870) sxy/tfoX 3938204..3938824 (-) 621 WP_169039627.1 TfoX/Sxy family DNA transformation protein Regulator
  HHA33_RS18870 (HHA33_18875) sulA 3939043..3939543 (+) 501 WP_039078587.1 SOS-induced cell division inhibitor SulA -
  HHA33_RS18875 (HHA33_18880) ompA 3939910..3940968 (+) 1059 WP_071194674.1 porin OmpA -
  HHA33_RS18880 (HHA33_18885) matP 3941041..3941493 (-) 453 WP_039078585.1 macrodomain Ter protein MatP -
  HHA33_RS18885 (HHA33_18890) - 3941677..3943437 (+) 1761 WP_169039628.1 Lon protease family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23785.49 Da        Isoelectric Point: 9.4309

>NTDB_id=439754 HHA33_RS18865 WP_169039627.1 3938204..3938824(-) (sxy/tfoX) [Phytobacter diazotrophicus strain UAEU22]
MKNISYQRIYQSREYLAPLGKIRFRAHFGGYSLSIDNTVFAMISEGELYLRACEESAEYRVTRSSPLLTIQKRGRAVSLN
YYFVDEHLWHDLPTLLRLSSQSLAAAREEKAARDTPHRLKDLPNISFQLEMMLFDAGIPDERMLRHLGAKACWLRLKALN
KHMGIKVLLGLEGAIIGLYEAALPALRRQELIDWYHEVGQKKNQDH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=439754 HHA33_RS18865 WP_169039627.1 3938204..3938824(-) (sxy/tfoX) [Phytobacter diazotrophicus strain UAEU22]
ATGAAAAACATATCCTATCAAAGGATCTATCAGTCCCGGGAATACCTCGCACCTTTGGGGAAAATTCGCTTTCGCGCGCA
TTTTGGTGGCTACAGCTTATCGATAGACAACACCGTGTTTGCGATGATTTCAGAAGGAGAGTTATACCTGCGTGCCTGTG
AGGAGAGCGCGGAATATCGGGTAACGCGAAGTTCACCTCTTCTGACAATCCAGAAGCGTGGCCGCGCTGTTTCACTTAAC
TACTACTTTGTTGATGAGCATCTCTGGCATGACTTGCCAACATTGTTGCGGCTTTCATCACAATCGCTCGCGGCGGCCCG
GGAGGAAAAAGCGGCGCGAGATACGCCTCATCGCCTTAAGGACCTTCCAAACATAAGCTTTCAACTTGAGATGATGCTTT
TTGACGCAGGTATACCAGACGAACGTATGCTGCGGCATCTGGGCGCCAAAGCGTGTTGGTTGCGTTTGAAGGCGTTGAAC
AAACACATGGGCATCAAGGTGCTGCTGGGTCTGGAAGGCGCGATCATTGGGCTGTATGAAGCCGCGCTCCCGGCGTTGAG
ACGCCAGGAGTTAATCGACTGGTACCACGAGGTGGGTCAGAAAAAAAACCAGGATCATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.921

98.058

0.568