Detailed information NTG0439752

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IQS24_RS16945
• Genome accession: NZ_CP063473
• Coordinates: 3499072..3500064 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EM18-18-42
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3494072..3505064

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IQS24_RS16925 (IQS24_16930)	otnK	3494847..3496109 (+)	1263	WP_000590405.1	3-oxo-tetronate kinase	-
IQS24_RS16930 (IQS24_16935)	ygbL	3496106..3496744 (+)	639	WP_001278994.1	aldolase	-
IQS24_RS16935 (IQS24_16940)	ygbM	3496749..3497525 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
IQS24_RS16940 (IQS24_16945)	ygbN	3497614..3498978 (+)	1365	WP_160528351.1	GntP family transporter	-
IQS24_RS16945 (IQS24_16950)	rpoS	3499072..3500064 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
IQS24_RS16950 (IQS24_16955)	nlpD	3500127..3501221 (-)	1095	WP_311763950.1	murein hydrolase activator NlpD	-
IQS24_RS16955 (IQS24_16960)	pcm	3501406..3502032 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IQS24_RS16960 (IQS24_16965)	surE	3502026..3502787 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
IQS24_RS16965 (IQS24_16970)	truD	3502768..3503817 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
IQS24_RS16970 (IQS24_16975)	ispF	3503814..3504293 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IQS24_RS16975 (IQS24_16980)	ispD	3504293..3505003 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=439752 IQS24_RS16945 WP_000081550.1 3499072..3500064(-) (rpoS) [Escherichia coli strain EM18-18-42]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=439752 IQS24_RS16945 WP_000081550.1 3499072..3500064(-) (rpoS) [Escherichia coli strain EM18-18-42]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATTGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715