Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IQS24_RS13600 Genome accession   NZ_CP063473
Coordinates   2771509..2772936 (+) Length   475 a.a.
NCBI ID   WP_001402309.1    Uniprot ID   -
Organism   Escherichia coli strain EM18-18-42     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2766509..2777936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQS24_RS13570 (IQS24_13575) pduU 2766885..2767235 (+) 351 WP_000211393.1 propanediol utilization microcompartment protein PduU -
  IQS24_RS13575 (IQS24_13580) - 2767240..2767683 (+) 444 WP_001189432.1 EutP/PduV family microcompartment system protein -
  IQS24_RS13580 (IQS24_13585) tmaR 2767784..2768113 (-) 330 WP_000450409.1 DUF496 family protein -
  IQS24_RS13585 (IQS24_13590) yeeA 2768285..2769343 (-) 1059 WP_105492503.1 FUSC family protein -
  IQS24_RS13590 (IQS24_13595) sbmC 2769542..2770015 (-) 474 WP_205595418.1 DNA gyrase inhibitor SbmC -
  IQS24_RS13595 (IQS24_13600) dacD 2770134..2771300 (-) 1167 WP_000830150.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  IQS24_RS13600 (IQS24_13605) sbcB 2771509..2772936 (+) 1428 WP_001402309.1 exodeoxyribonuclease I Machinery gene
  IQS24_RS13605 (IQS24_13610) tsuB 2772979..2773206 (-) 228 WP_000985280.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IQS24_RS13610 (IQS24_13615) tsuA 2773220..2774278 (-) 1059 WP_000492315.1 thiosulfate utilization transporter TsuA/YeeE -
  IQS24_RS13615 (IQS24_13620) - 2774301..2775275 (-) 975 WP_012478345.1 IS30-like element ISApl1 family transposase -
  IQS24_RS13620 (IQS24_13625) plaP 2775529..2776887 (-) 1359 WP_000019201.1 putrescine/proton symporter PlaP -
  IQS24_RS13625 (IQS24_13630) yoeI 2776877..2776939 (-) 63 WP_010723108.1 membrane protein YoeI -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54498.80 Da        Isoelectric Point: 5.6102

>NTDB_id=439739 IQS24_RS13600 WP_001402309.1 2771509..2772936(+) (sbcB) [Escherichia coli strain EM18-18-42]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLNNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=439739 IQS24_RS13600 WP_001402309.1 2771509..2772936(+) (sbcB) [Escherichia coli strain EM18-18-42]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCAATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579