Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HG574_RS06635 Genome accession   NZ_CP051541
Coordinates   1391752..1393065 (-) Length   437 a.a.
NCBI ID   WP_202144713.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-001     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1386752..1398065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG574_RS06605 (HG574_06595) nadC 1387215..1388036 (-) 822 WP_202144708.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HG574_RS06610 (HG574_06600) nadA 1388036..1389046 (-) 1011 WP_202144709.1 quinolinate synthase NadA -
  HG574_RS06615 (HG574_06605) - 1389036..1389839 (-) 804 WP_202144710.1 phosphatidylserine decarboxylase -
  HG574_RS06620 (HG574_06610) - 1389833..1390339 (-) 507 WP_000953090.1 hypothetical protein -
  HG574_RS06625 (HG574_06615) - 1390352..1390846 (-) 495 WP_202144711.1 hypothetical protein -
  HG574_RS06630 (HG574_06620) mqnP 1390839..1391681 (-) 843 WP_237392880.1 menaquinone biosynthesis prenyltransferase MqnP -
  HG574_RS06635 (HG574_06625) comEC/comE3 1391752..1393065 (-) 1314 WP_202144713.1 ComEC/Rec2 family competence protein Machinery gene
  HG574_RS06640 (HG574_06630) - 1393062..1394522 (-) 1461 WP_202144714.1 replicative DNA helicase -
  HG574_RS06645 (HG574_06635) - 1394533..1395927 (-) 1395 WP_202144715.1 NAD(P)H-hydrate dehydratase -
  HG574_RS06650 (HG574_06640) crdS 1395930..1397117 (-) 1188 WP_202145339.1 copper-sensing histidine kinase CrdS -
  HG574_RS06655 (HG574_06645) crdR 1397098..1397739 (-) 642 WP_001169748.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50194.19 Da        Isoelectric Point: 9.8951

>NTDB_id=439690 HG574_RS06635 WP_202144713.1 1391752..1393065(-) (comEC/comE3) [Helicobacter pylori strain LIM-001]
MKDKTFQGAFELLATPKEYLVCGVILSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKFKFCSFLESLKSCFFQTYSFSLTRKHNFKSHVRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDKANALGINHLLAISGFHLGILSMSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKDSSFFKRSFQAIALS
VLVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDNILSMPLTIPTISVSSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSTGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=439690 HG574_RS06635 WP_202144713.1 1391752..1393065(-) (comEC/comE3) [Helicobacter pylori strain LIM-001]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACCTGGTGTGTGGGGTTATTTTAAG
CCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAGTTCAAATTTTGTTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTACTCTTTTTCTTTAACACGAAAACACAATTTCAAATCGCATG
TGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGCGCGTTATTCATAGGGGATAGCTTG
AATAAGGATTTAAGAGACAAAGCCAACGCGCTAGGGATCAACCACTTACTGGCCATTAGCGGGTTCCATTTAGGGATTTT
AAGCATGAGCGTGTATTTTCTTTTTTCGCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCATCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTACATCT
TTTTATTTTTAAAACACACTCAAATTTTTTTTAAAGATTCTTCTTTTTTCAAGCGATCGTTTCAAGCGATCGCTTTAAGC
GTGTTAGTGTTTTTGAACATGCTCATTGTCGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGCTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTATTGGATAATA
TTCTAAGCATGCCTTTAACCATCCCCACGATTTCGGTTTCTTCACCTTTATGGCTTTTGGGGGTGCATTTGTTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAGGTTTATTTAAGCATGAATGTTTTAAGCACAGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.279

100

0.943