Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HG575_RS00450 Genome accession   NZ_CP051540
Coordinates   96307..97620 (+) Length   437 a.a.
NCBI ID   WP_202248402.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-002     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 91307..102620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG575_RS00430 (HG575_00430) crdR 91633..92274 (+) 642 WP_202248396.1 copper response regulator transcription factor CrdR -
  HG575_RS00435 (HG575_00435) crdS 92240..93442 (+) 1203 WP_202249216.1 copper-sensing histidine kinase CrdS -
  HG575_RS00440 (HG575_00440) - 93445..94839 (+) 1395 WP_202248398.1 NAD(P)H-hydrate dehydratase -
  HG575_RS00445 (HG575_00445) - 94850..96310 (+) 1461 WP_202248400.1 replicative DNA helicase -
  HG575_RS00450 (HG575_00450) comEC/comE3 96307..97620 (+) 1314 WP_202248402.1 ComEC/Rec2 family competence protein Machinery gene
  HG575_RS00455 (HG575_00455) mqnP 97647..98531 (+) 885 WP_202248404.1 menaquinone biosynthesis prenyltransferase MqnP -
  HG575_RS00460 (HG575_00460) - 98524..99018 (+) 495 WP_202248406.1 hypothetical protein -
  HG575_RS00465 (HG575_00465) - 99034..99537 (+) 504 WP_202248408.1 helix-turn-helix domain-containing protein -
  HG575_RS00470 (HG575_00470) - 99534..100337 (+) 804 WP_202248410.1 phosphatidylserine decarboxylase -
  HG575_RS00475 (HG575_00475) nadA 100327..101337 (+) 1011 WP_202248412.1 quinolinate synthase NadA -
  HG575_RS00480 (HG575_00480) nadC 101337..102158 (+) 822 WP_202248413.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HG575_RS07790 (HG575_00485) - 102183..102317 (+) 135 WP_272928378.1 hypothetical protein -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50122.06 Da        Isoelectric Point: 9.7963

>NTDB_id=439660 HG575_RS00450 WP_202248402.1 96307..97620(+) (comEC/comE3) [Helicobacter pylori strain LIM-002]
MKDKTFQGAFELLATPKEYLWCGVVLSLVLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKSMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHARHFIDSVHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKTSSFLVRSFQAISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHFLSMPLTIPTISISSPLWLLGVHLCLT
ILSARSFKVYLSMNVLSMGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=439660 HG575_RS00450 WP_202248402.1 96307..97620(+) (comEC/comE3) [Helicobacter pylori strain LIM-002]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTATGGTGTGGGGTTGTTTTAAG
CCTTGTGTTGGCGATTAACCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTCTCAAAACCTACAAGCTTGAACG
CTCAAATTCTATTACAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAGCTCCAATCTAAGAGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAGATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATG
CACGCCATTTCATTGACAGCGTTCATTCCAACGCTTTGGTGGGTAATTTGTATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTTCTTTTTTCGCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGGTTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTCTTAAAACACACTCAAATTTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAAGCCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATTATCGCGCATGCCTTTTTCCCTATGTTTTCACCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTGGGGTCTTTGTTGGATCATT
TTTTAAGCATGCCTTTAACCATCCCTACGATTTCAATCTCTTCGCCCTTATGGCTTTTAGGGGTGCATTTATGTTTAACG
ATTTTGAGTGCGCGTTCTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCATGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.423

100

0.954