Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HG575_RS00095 Genome accession   NZ_CP051540
Coordinates   13864..14127 (+) Length   87 a.a.
NCBI ID   WP_187892425.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-002     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8864..19127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG575_RS00070 (HG575_00070) groES 9152..9508 (-) 357 WP_000671934.1 co-chaperone GroES -
  HG575_RS00075 (HG575_00075) dnaG 9790..11469 (+) 1680 WP_202248312.1 DNA primase -
  HG575_RS00080 (HG575_00080) - 11466..12518 (+) 1053 WP_202248314.1 MnmA/TRMU family protein -
  HG575_RS00085 (HG575_00085) - 12610..13437 (+) 828 WP_202248316.1 DUF5718 family protein -
  HG575_RS00090 (HG575_00090) comB2 13583..13864 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HG575_RS00095 (HG575_00095) comB3 13864..14127 (+) 264 WP_187892425.1 competence protein ComB Machinery gene
  HG575_RS00100 (HG575_00100) comB4 14129..16492 (+) 2364 WP_202248318.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HG575_RS00110 (HG575_00110) - 16794..18134 (+) 1341 WP_039087052.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10020.11 Da        Isoelectric Point: 9.5290

>NTDB_id=439652 HG575_RS00095 WP_187892425.1 13864..14127(+) (comB3) [Helicobacter pylori strain LIM-002]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLVLFSALEFFDEDIADIIIAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=439652 HG575_RS00095 WP_187892425.1 13864..14127(+) (comB3) [Helicobacter pylori strain LIM-002]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAGATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCACCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGTGCTCTTTAGCGCGCTGGAATTTTTTGATGAAGACATTGCAGACATTATTATCGCTAAAAGCAAAATAAAGACT
AAAACCAAATGCTATAGGGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966