Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HG576_RS07070 Genome accession   NZ_CP051539
Coordinates   1494072..1494647 (-) Length   191 a.a.
NCBI ID   WP_077652124.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-003     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1489072..1499647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG576_RS07060 (HG576_07050) - 1490774..1492007 (-) 1234 Protein_1389 restriction endonuclease subunit S -
  HG576_RS07065 (HG576_07055) - 1492004..1494040 (-) 2037 WP_097709062.1 N-6 DNA methylase -
  HG576_RS07070 (HG576_07060) comFC 1494072..1494647 (-) 576 WP_077652124.1 ComF family protein Machinery gene
  HG576_RS07075 (HG576_07065) tmk 1494635..1495210 (-) 576 WP_202138819.1 dTMP kinase -
  HG576_RS07080 (HG576_07070) coaD 1495212..1495685 (-) 474 WP_001169242.1 pantetheine-phosphate adenylyltransferase -
  HG576_RS07085 (HG576_07075) - 1495685..1496248 (-) 564 WP_000780111.1 UbiX family flavin prenyltransferase -
  HG576_RS07090 (HG576_07080) flgA 1496258..1496914 (-) 657 WP_202138820.1 flagellar basal body P-ring formation chaperone FlgA -
  HG576_RS07095 (HG576_07085) uvrD 1496911..1498956 (-) 2046 WP_202139249.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21318.87 Da        Isoelectric Point: 8.8864

>NTDB_id=439649 HG576_RS07070 WP_077652124.1 1494072..1494647(-) (comFC) [Helicobacter pylori strain LIM-003]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEVEELIKSKYALIGSRILPLLSQKAGKEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=439649 HG576_RS07070 WP_077652124.1 1494072..1494647(-) (comFC) [Helicobacter pylori strain LIM-003]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTAAACGATCTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAGTAGAAGAGCTCATTAAAAGCAAATACG
CACTAATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCTGGCAAAGAATTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTGAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

96.335

100

0.963