Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HG576_RS06600 Genome accession   NZ_CP051539
Coordinates   1389022..1390335 (-) Length   437 a.a.
NCBI ID   WP_198932103.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-003     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1384022..1395335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG576_RS06570 (HG576_06560) nadC 1384485..1385306 (-) 822 WP_097705761.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HG576_RS06575 (HG576_06565) nadA 1385306..1386316 (-) 1011 WP_202138779.1 quinolinate synthase NadA -
  HG576_RS06580 (HG576_06570) - 1386306..1387109 (-) 804 WP_202138780.1 phosphatidylserine decarboxylase -
  HG576_RS06585 (HG576_06575) - 1387103..1387609 (-) 507 WP_202138781.1 helix-turn-helix domain-containing protein -
  HG576_RS06590 (HG576_06580) - 1387622..1388116 (-) 495 WP_183033718.1 hypothetical protein -
  HG576_RS06595 (HG576_06585) mqnP 1388109..1388951 (-) 843 WP_237393083.1 menaquinone biosynthesis prenyltransferase MqnP -
  HG576_RS06600 (HG576_06590) comEC/comE3 1389022..1390335 (-) 1314 WP_198932103.1 ComEC/Rec2 family competence protein Machinery gene
  HG576_RS06605 (HG576_06595) - 1390332..1391798 (-) 1467 WP_097566712.1 replicative DNA helicase -
  HG576_RS06610 (HG576_06600) - 1391809..1393209 (-) 1401 WP_000954016.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HG576_RS06615 (HG576_06605) crdS 1393212..1394414 (-) 1203 WP_078287328.1 copper-sensing histidine kinase CrdS -
  HG576_RS06620 (HG576_06610) crdR 1394380..1395021 (-) 642 WP_078249156.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50115.07 Da        Isoelectric Point: 9.8688

>NTDB_id=439647 HG576_RS06600 WP_198932103.1 1389022..1390335(-) (comEC/comE3) [Helicobacter pylori strain LIM-003]
MKDKTFQGAFELLSTPKEYLWCGVVLSLLLAINLYLEYLNHQKLDFSKPTSLSAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSNALVGNLYRALFIGDSL
NKDLRDKANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQAISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDRLLSMPLTIPTISIPSPLWLLGVHLCLT
ILSVRFFKVYLSMNVLSMGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=439647 HG576_RS06600 WP_198932103.1 1389022..1390335(-) (comEC/comE3) [Helicobacter pylori strain LIM-003]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTTCAACCCCCAAAGAATACTTATGGTGTGGGGTTGTTTTAAG
CCTTTTATTGGCGATTAACCTTTATTTAGAATACTTGAATCACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAGTG
CTCAAATCTTATTACAATACCCTAAGACTAAAGATCAAAAAACCTATTTTGTCTTAAAACTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAATCTCCAATACCGCCACGCGCAATTTTTTGGCAAGATCAAGCCTTGTTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCCAACGCTTTAGTGGGTAATTTGTATCGAGCGCTTTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAAGGCTAACGCGTTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTGTTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGGTTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTCTTAAAACACACTCAAGCCTTTTTTAAAACTTCTTCTTTTTTGGCGCGATCTTTTCAAGCCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATTATCGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGCTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCGCC
TTTTAAGCATGCCTTTAACAATCCCTACGATTTCAATCCCTTCGCCTTTATGGCTTTTAGGGGTGCATTTATGTTTAACG
ATTTTAAGCGTGCGTTTTTTTAAGGTTTATTTAAGCATGAATGTTTTAAGCATGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCCAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

96.11

100

0.961