Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HG578_RS06435 Genome accession   NZ_CP051537
Coordinates   1361492..1362805 (-) Length   437 a.a.
NCBI ID   WP_202134678.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-005     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1356492..1367805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG578_RS06405 (HG578_06400) nadC 1356955..1357776 (-) 822 WP_202134673.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HG578_RS06410 (HG578_06405) nadA 1357776..1358786 (-) 1011 WP_202134674.1 quinolinate synthase NadA -
  HG578_RS06415 (HG578_06410) - 1358776..1359579 (-) 804 WP_202134675.1 phosphatidylserine decarboxylase -
  HG578_RS06420 (HG578_06415) - 1359573..1360079 (-) 507 WP_000953094.1 hypothetical protein -
  HG578_RS06425 (HG578_06420) - 1360092..1360586 (-) 495 WP_202134676.1 hypothetical protein -
  HG578_RS06430 (HG578_06425) mqnP 1360579..1361421 (-) 843 WP_237393461.1 menaquinone biosynthesis prenyltransferase MqnP -
  HG578_RS06435 (HG578_06430) comEC/comE3 1361492..1362805 (-) 1314 WP_202134678.1 ComEC/Rec2 family competence protein Machinery gene
  HG578_RS06440 (HG578_06435) - 1362802..1364262 (-) 1461 WP_120867114.1 replicative DNA helicase -
  HG578_RS06445 (HG578_06440) - 1364273..1365673 (-) 1401 WP_202134679.1 NAD(P)H-hydrate dehydratase -
  HG578_RS06450 (HG578_06445) crdS 1365676..1366878 (-) 1203 WP_202135199.1 copper-sensing histidine kinase CrdS -
  HG578_RS06455 (HG578_06450) crdR 1366844..1367485 (-) 642 WP_202134680.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50269.12 Da        Isoelectric Point: 9.8459

>NTDB_id=439628 HG578_RS06435 WP_202134678.1 1361492..1362805(-) (comEC/comE3) [Helicobacter pylori strain LIM-005]
MKDKTFQGAFELLATPKEYLWCGVFLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKHNFKSHARHFIDSAHENALVGNLYRALFIGDNL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKDSSFFKRSFQAIALS
VLVFLNMLIVVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDNILSMPLTIPTISVSSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSTGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=439628 HG578_RS06435 WP_202134678.1 1361492..1362805(-) (comEC/comE3) [Helicobacter pylori strain LIM-005]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTATGGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCGATCAATCTTTATTTAGAATACTTGAATTATCAAAAGCTTGATTTTTCAAAACCTACGAGCCTGAACG
CTCAAATTTTATTACAATACCCTAAAACGAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAAATCAAGCCTTGCTC
GTTTTTAGAATCGTTAAAATCATGTTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACACAATTTCAAATCGCATG
CGCGCCATTTCATTGATAGCGCTCATGAAAACGCTTTGGTGGGTAATTTGTATCGAGCGTTATTTATAGGGGATAATTTG
AATAAAGATTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTGGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCGCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCATCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTACATCT
TTTTATTTTTAAAACACACTCAAATTTTTTTTAAAGATTCTTCTTTTTTCAAGCGATCGTTTCAAGCGATCGCTTTAAGC
GTGTTAGTGTTTTTGAACATGCTCATTGTCGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGCTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTATTGGATAATA
TTCTAAGCATGCCTTTAACCATCCCCACGATTTCGGTTTCTTCACCTTTATGGCTTTTGGGGGTGCATTTGTTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAGGTTTATTTAAGCATGAATGTTTTAAGCACAGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.195

100

0.952