Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HG581_RS06555 Genome accession   NZ_CP051535
Coordinates   1377383..1378696 (-) Length   437 a.a.
NCBI ID   WP_202137877.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-008     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1372383..1383696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG581_RS06525 (HG581_06530) nadC 1372848..1373669 (-) 822 WP_202137873.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HG581_RS06530 (HG581_06535) nadA 1373669..1374679 (-) 1011 WP_202137874.1 quinolinate synthase NadA -
  HG581_RS06535 (HG581_06540) - 1374669..1375472 (-) 804 WP_202137875.1 phosphatidylserine decarboxylase -
  HG581_RS06540 (HG581_06545) - 1375466..1375972 (-) 507 WP_000953090.1 hypothetical protein -
  HG581_RS06545 (HG581_06550) - 1375985..1376479 (-) 495 WP_015643723.1 hypothetical protein -
  HG581_RS06550 (HG581_06555) mqnP 1376472..1377356 (-) 885 WP_202137876.1 menaquinone biosynthesis prenyltransferase MqnP -
  HG581_RS06555 (HG581_06560) comEC/comE3 1377383..1378696 (-) 1314 WP_202137877.1 ComEC/Rec2 family competence protein Machinery gene
  HG581_RS06560 (HG581_06565) - 1378693..1380153 (-) 1461 WP_202137878.1 replicative DNA helicase -
  HG581_RS06565 (HG581_06570) - 1380164..1381558 (-) 1395 WP_202137879.1 NAD(P)H-hydrate dehydratase -
  HG581_RS06570 (HG581_06575) crdS 1381561..1382763 (-) 1203 WP_202138525.1 copper-sensing histidine kinase CrdS -
  HG581_RS06575 (HG581_06580) crdR 1382729..1383370 (-) 642 WP_202137880.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50420.34 Da        Isoelectric Point: 9.8315

>NTDB_id=439588 HG581_RS06555 WP_202137877.1 1377383..1378696(-) (comEC/comE3) [Helicobacter pylori strain LIM-008]
MKDKTFQGAFELLATPKEYLWCGVFLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKNMI
FYTTIKEPLKNLQYRYAQFFGKFKFCSFLESLKSCFFQTYSFSLTRKHNFKSHVRHFIDSAHENALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTSLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLILACCIAIVLLPKLLFSVGFLLSVCGVWYIFLFLKHAQIFFKNSSFLARSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHFLSMPLTIPTISISSPLWLLGAHLFLT
IVSARFFKVYLSMNVLSMGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=439588 HG581_RS06555 WP_202137877.1 1377383..1378696(-) (comEC/comE3) [Helicobacter pylori strain LIM-008]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTATGGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCGATTAACCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACGAAAGATCAAAAAACCTATTTTGTCTTAAAACTCCAATCAAAAAACATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTATGCGCAATTTTTTGGCAAGTTCAAATTTTGTTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACACAATTTCAAATCGCATG
TGCGCCATTTCATTGACAGCGCTCATGAAAACGCTTTGGTGGGTAATTTGTATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAATGCGCTAGGGATCAACCACTTACTAGCCATTAGTGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCTCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTGTTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCAATAGTGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTGTGTGGGGTGTGGTATATCT
TTTTATTCTTAAAACACGCTCAAATTTTTTTTAAAAATTCTTCTTTTTTGGCGCGATCGTTTCAAGTCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATTATCGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTATTGGATCATT
TTTTAAGCATGCCTTTAACAATCCCCACGATTTCAATCTCTTCGCCCTTATGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTGTGAGTGCGCGTTTTTTTAAGGTTTATTTAAGCATGAATGTTTTGAGCATGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.05

100

0.941