Detailed information NTG0439586

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IQS26_RS10605
• Genome accession: NZ_CP063459
• Coordinates: 2206396..2207388 (+)
• Length: 330 a.a.
• NCBI ID: WP_048943255.1
• Uniprot ID: -
• Organism: Escherichia coli strain EM22-18-53
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2201396..2212388

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IQS26_RS10575 (IQS26_10570)	ispD	2201457..2202167 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IQS26_RS10580 (IQS26_10575)	ispF	2202167..2202646 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IQS26_RS10585 (IQS26_10580)	truD	2202643..2203692 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
IQS26_RS10590 (IQS26_10585)	surE	2203673..2204434 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
IQS26_RS10595 (IQS26_10590)	pcm	2204428..2205054 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IQS26_RS10600 (IQS26_10595)	nlpD	2205239..2206333 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
IQS26_RS10605 (IQS26_10600)	rpoS	2206396..2207388 (+)	993	WP_048943255.1	RNA polymerase sigma factor RpoS	Regulator
IQS26_RS10610 (IQS26_10605)	ygbN	2207482..2208846 (-)	1365	WP_000104456.1	GntP family transporter	-
IQS26_RS10615 (IQS26_10610)	ygbM	2208935..2209711 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
IQS26_RS10620 (IQS26_10615)	ygbL	2209716..2210354 (-)	639	WP_001278994.1	aldolase	-
IQS26_RS10625 (IQS26_10620)	otnK	2210351..2211613 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38002.87 Da
• Isoelectric Point: 4.5597

>NTDB_id=439586 IQS26_RS10605 WP_048943255.1 2206396..2207388(+) (rpoS) [Escherichia coli strain EM22-18-53]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEATTLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=439586 IQS26_RS10605 WP_048943255.1 2206396..2207388(+) (rpoS) [Escherichia coli strain EM22-18-53]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGACAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715