Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HG581_RS00090 Genome accession   NZ_CP051535
Coordinates   13611..13892 (+) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-008     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8611..18892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG581_RS00070 (HG581_00070) groES 9174..9530 (-) 357 WP_000671958.1 co-chaperone GroES -
  HG581_RS00075 (HG581_00075) dnaG 9819..11498 (+) 1680 WP_202138038.1 DNA primase -
  HG581_RS00080 (HG581_00080) - 11495..12547 (+) 1053 WP_202138039.1 MnmA/TRMU family protein -
  HG581_RS00085 (HG581_00085) - 12637..13464 (+) 828 WP_202138040.1 DUF5718 family protein -
  HG581_RS00090 (HG581_00090) comB2 13611..13892 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  HG581_RS00095 (HG581_00095) comB3 13892..14155 (+) 264 WP_000584951.1 hypothetical protein Machinery gene
  HG581_RS00100 (HG581_00100) comB4 14157..16520 (+) 2364 WP_202138041.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HG581_RS00110 (HG581_00110) - 16825..18165 (+) 1341 WP_202138488.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=439569 HG581_RS00090 WP_001272690.1 13611..13892(+) (comB2) [Helicobacter pylori strain LIM-008]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=439569 HG581_RS00090 WP_001272690.1 13611..13892(+) (comB2) [Helicobacter pylori strain LIM-008]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1