Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HG582_RS06560 Genome accession   NZ_CP051534
Coordinates   1372048..1373361 (-) Length   437 a.a.
NCBI ID   WP_202143776.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-009     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1367048..1378361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG582_RS06530 (HG582_06535) nadC 1367511..1368332 (-) 822 WP_202143772.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HG582_RS06535 (HG582_06540) nadA 1368332..1369342 (-) 1011 WP_202143773.1 quinolinate synthase NadA -
  HG582_RS06540 (HG582_06545) - 1369332..1370135 (-) 804 WP_202143774.1 phosphatidylserine decarboxylase -
  HG582_RS06545 (HG582_06550) - 1370129..1370635 (-) 507 WP_000953120.1 hypothetical protein -
  HG582_RS06550 (HG582_06555) - 1370648..1371142 (-) 495 WP_001865420.1 hypothetical protein -
  HG582_RS06555 (HG582_06560) mqnP 1371135..1371977 (-) 843 WP_237392744.1 menaquinone biosynthesis prenyltransferase MqnP -
  HG582_RS06560 (HG582_06565) comEC/comE3 1372048..1373361 (-) 1314 WP_202143776.1 ComEC/Rec2 family competence protein Machinery gene
  HG582_RS06565 (HG582_06570) - 1373358..1374818 (-) 1461 WP_202143777.1 replicative DNA helicase -
  HG582_RS06570 (HG582_06575) - 1374829..1376223 (-) 1395 WP_202143778.1 NAD(P)H-hydrate dehydratase -
  HG582_RS06575 (HG582_06580) crdS 1376226..1377428 (-) 1203 WP_202144395.1 copper-sensing histidine kinase CrdS -
  HG582_RS06580 (HG582_06585) crdR 1377394..1378035 (-) 642 WP_202143779.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50163.16 Da        Isoelectric Point: 9.8391

>NTDB_id=439565 HG582_RS06560 WP_202143776.1 1372048..1373361(-) (comEC/comE3) [Helicobacter pylori strain LIM-009]
MKDKTFQGAFELLATPKEYLWCGVFLSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRRFIDGAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQAIALS
VLVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHILSMPLTIPTISVPSPLWLLGVHLCLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=439565 HG582_RS06560 WP_202143776.1 1372048..1373361(-) (comEC/comE3) [Helicobacter pylori strain LIM-009]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTATGGTGTGGGGTGTTTTTAAG
CCTTTTGTTAGCACTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGTATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTAGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGATGGTGCTCATTCAAGCGCTTTAGTGGGGAATTTATACCGCGCATTATTTATAGGGGATAGTTTG
AATAAAGACTTAAGAGACAGGGCTAACGCTCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGTTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCCTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTAATGCGATCGTTTCAAGCGATCGCTTTAAGC
GTGTTAGTGTTTTTGAACATGCTCATTGTCGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTGTTGGATCATA
TTTTAAGCATGCCTTTAACCATCCCTACGATTTCGGTTCCTTCGCCCTTATGGCTTTTAGGGGTGCATTTATGTTTAACG
ATTTTGAGTGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95