Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HG583_RS07195 | Genome accession | NZ_CP051533 |
| Coordinates | 1514495..1514758 (+) | Length | 87 a.a. |
| NCBI ID | WP_001177721.1 | Uniprot ID | B3VT61 |
| Organism | Helicobacter pylori strain LIM-010 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1509495..1519758
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG583_RS07160 (HG583_07135) | - | 1509732..1510214 (+) | 483 | WP_202142840.1 | hypothetical protein | - |
| HG583_RS07165 (HG583_07140) | - | 1510214..1512025 (+) | 1812 | WP_202142841.1 | DUF262 domain-containing protein | - |
| HG583_RS07170 (HG583_07145) | - | 1512175..1512621 (+) | 447 | Protein_1405 | hypothetical protein | - |
| HG583_RS07175 (HG583_07150) | - | 1512707..1513495 (+) | 789 | WP_202142842.1 | integrase | - |
| HG583_RS07180 (HG583_07155) | - | 1513516..1513722 (+) | 207 | WP_237389105.1 | hypothetical protein | - |
| HG583_RS07185 (HG583_07160) | - | 1513719..1514198 (+) | 480 | WP_202138298.1 | hypothetical protein | - |
| HG583_RS07190 (HG583_07165) | comB2 | 1514195..1514485 (+) | 291 | WP_021176075.1 | TrbC/VirB2 family protein | Machinery gene |
| HG583_RS07195 (HG583_07170) | comB3 | 1514495..1514758 (+) | 264 | WP_001177721.1 | hypothetical protein | Machinery gene |
| HG583_RS07200 (HG583_07175) | - | 1514770..1515006 (+) | 237 | WP_128043359.1 | hypothetical protein | - |
| HG583_RS07205 (HG583_07180) | - | 1515006..1517522 (+) | 2517 | WP_202142843.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| HG583_RS08445 | - | 1517519..1517659 (+) | 141 | WP_000789926.1 | hypothetical protein | - |
| HG583_RS07210 (HG583_07185) | - | 1517652..1517996 (+) | 345 | Protein_1414 | hypothetical protein | - |
| HG583_RS07215 (HG583_07190) | tnpA | 1518166..1518633 (+) | 468 | WP_000063685.1 | IS200/IS605 family transposase | - |
| HG583_RS07220 (HG583_07195) | - | 1518602..1519750 (+) | 1149 | WP_202142844.1 | RNA-guided endonuclease TnpB family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9946.74 Da Isoelectric Point: 5.7206
>NTDB_id=439546 HG583_RS07195 WP_001177721.1 1514495..1514758(+) (comB3) [Helicobacter pylori strain LIM-010]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSSFVPFVMTPWLDILNSLMLYACFLLVFSIAEFFDEDISDILIAHSKIKT
KSNSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSSFVPFVMTPWLDILNSLMLYACFLLVFSIAEFFDEDISDILIAHSKIKT
KSNSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=439546 HG583_RS07195 WP_001177721.1 1514495..1514758(+) (comB3) [Helicobacter pylori strain LIM-010]
ATGCAATTAGTCGGTATTTCAGTTTCTAATCTCAAAGAAATCAGTTCCAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTGCTCTCAAGTTTTGTGCCATTTGTGATGACACCTTGGCTAGATATATTGAACTCTCTTATGCTGTATGCGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTTTTTGATGAAGATATAAGCGACATTTTAATCGCTCATTCCAAGATTAAAACC
AAATCTAATTCATTTTATGCTTAA
ATGCAATTAGTCGGTATTTCAGTTTCTAATCTCAAAGAAATCAGTTCCAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTGCTCTCAAGTTTTGTGCCATTTGTGATGACACCTTGGCTAGATATATTGAACTCTCTTATGCTGTATGCGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTTTTTGATGAAGATATAAGCGACATTTTAATCGCTCATTCCAAGATTAAAACC
AAATCTAATTCATTTTATGCTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
58.621 |
100 |
0.586 |