Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HG583_RS07190 Genome accession   NZ_CP051533
Coordinates   1514195..1514485 (+) Length   96 a.a.
NCBI ID   WP_021176075.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-010     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1509195..1519485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG583_RS07155 (HG583_07130) - 1509326..1509763 (+) 438 WP_202142839.1 PT domain-containing protein -
  HG583_RS07160 (HG583_07135) - 1509732..1510214 (+) 483 WP_202142840.1 hypothetical protein -
  HG583_RS07165 (HG583_07140) - 1510214..1512025 (+) 1812 WP_202142841.1 DUF262 domain-containing protein -
  HG583_RS07170 (HG583_07145) - 1512175..1512621 (+) 447 Protein_1405 hypothetical protein -
  HG583_RS07175 (HG583_07150) - 1512707..1513495 (+) 789 WP_202142842.1 integrase -
  HG583_RS07180 (HG583_07155) - 1513516..1513722 (+) 207 WP_237389105.1 hypothetical protein -
  HG583_RS07185 (HG583_07160) - 1513719..1514198 (+) 480 WP_202138298.1 hypothetical protein -
  HG583_RS07190 (HG583_07165) comB2 1514195..1514485 (+) 291 WP_021176075.1 TrbC/VirB2 family protein Machinery gene
  HG583_RS07195 (HG583_07170) comB3 1514495..1514758 (+) 264 WP_001177721.1 hypothetical protein Machinery gene
  HG583_RS07200 (HG583_07175) - 1514770..1515006 (+) 237 WP_128043359.1 hypothetical protein -
  HG583_RS07205 (HG583_07180) - 1515006..1517522 (+) 2517 WP_202142843.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  HG583_RS08445 - 1517519..1517659 (+) 141 WP_000789926.1 hypothetical protein -
  HG583_RS07210 (HG583_07185) - 1517652..1517996 (+) 345 Protein_1414 hypothetical protein -
  HG583_RS07215 (HG583_07190) tnpA 1518166..1518633 (+) 468 WP_000063685.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10940.26 Da        Isoelectric Point: 11.1589

>NTDB_id=439545 HG583_RS07190 WP_021176075.1 1514195..1514485(+) (comB2) [Helicobacter pylori strain LIM-010]
MKKLRHFRKLIAFLGFSPLLLQADITTFFNSIEQQLQSPTGKGILMIIFIAIGIFVWKNLDRWKEILLTILGVVLGTLIF
FKAPALAQWFMTSVGN

Nucleotide


Download         Length: 291 bp        

>NTDB_id=439545 HG583_RS07190 WP_021176075.1 1514195..1514485(+) (comB2) [Helicobacter pylori strain LIM-010]
ATGAAAAAATTAAGACATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCACTTTTATTGCAAGCGGATATAACTAC
CTTTTTTAATAGCATTGAACAACAACTCCAAAGCCCTACAGGTAAGGGCATCTTAATGATTATATTCATTGCTATTGGTA
TTTTTGTGTGGAAAAACTTAGATAGATGGAAAGAAATATTATTAACTATTTTGGGAGTTGTTTTAGGAACGCTGATATTT
TTTAAAGCCCCAGCCTTAGCTCAATGGTTTATGACCAGTGTTGGTAACTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

59.77

90.625

0.542