Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HG583_RS07010 Genome accession   NZ_CP051533
Coordinates   1473313..1474626 (-) Length   437 a.a.
NCBI ID   WP_202142822.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-010     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1468313..1479626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG583_RS06980 (HG583_06955) nadC 1468776..1469597 (-) 822 WP_202142816.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HG583_RS06985 (HG583_06960) nadA 1469597..1470607 (-) 1011 WP_202142817.1 quinolinate synthase NadA -
  HG583_RS06990 (HG583_06965) - 1470597..1471400 (-) 804 WP_202142818.1 phosphatidylserine decarboxylase -
  HG583_RS06995 (HG583_06970) - 1471394..1471900 (-) 507 WP_202142819.1 helix-turn-helix domain-containing protein -
  HG583_RS07000 (HG583_06975) - 1471913..1472407 (-) 495 WP_202142820.1 hypothetical protein -
  HG583_RS07005 (HG583_06980) mqnP 1472400..1473242 (-) 843 WP_237389104.1 menaquinone biosynthesis prenyltransferase MqnP -
  HG583_RS07010 (HG583_06985) comEC/comE3 1473313..1474626 (-) 1314 WP_202142822.1 ComEC/Rec2 family competence protein Machinery gene
  HG583_RS07015 (HG583_06990) - 1474623..1476089 (-) 1467 WP_202142823.1 replicative DNA helicase -
  HG583_RS07020 (HG583_06995) - 1476100..1477494 (-) 1395 WP_202142824.1 NAD(P)H-hydrate dehydratase -
  HG583_RS07025 (HG583_07000) crdS 1477497..1478699 (-) 1203 WP_202143463.1 copper-sensing histidine kinase CrdS -
  HG583_RS07030 (HG583_07005) crdR 1478665..1479306 (-) 642 WP_001169752.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50203.22 Da        Isoelectric Point: 9.9130

>NTDB_id=439543 HG583_RS07010 WP_202142822.1 1473313..1474626(-) (comEC/comE3) [Helicobacter pylori strain LIM-010]
MKDKTFQGAFELLATPKEYLWCGVVLSLLLAINLYLEYLNYQKLDFSKPTSLSAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGRIKSCSFLESLKSCFFQTYSFSLTRKHNFKSHARHFIDSVHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKTSSFLMRSFQAISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHILSMPLTIPTISIPSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSMGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=439543 HG583_RS07010 WP_202142822.1 1473313..1474626(-) (comEC/comE3) [Helicobacter pylori strain LIM-010]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTATGGTGTGGGGTTGTTTTAAG
CCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGTTTGAGCG
CTCAAATCTTATTACAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAGGATCAAATCTTGTTC
GTTCTTAGAATCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACACAATTTCAAATCGCATG
CGCGCCATTTCATTGACAGCGTCCATTCCAACGCTTTGGTGGGTAATTTGTATCGAGCGTTATTCATAGGGGATAGTTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTGTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAATTTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAAGCCATAAGCTTAAGC
GCACTGGTGTTTTTGAACATGCTCATTATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTTTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTGTTGGATCATA
TTCTAAGCATGCCTTTAACAATCCCTACGATTTCAATCCCTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGATTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCATGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.881

100

0.959