Detailed information NTG0439538

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HG583_RS02870
• Genome accession: NZ_CP051533
• Coordinates: 600010..601209 (-)
• Length: 399 a.a.
• NCBI ID: WP_202143276.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain LIM-010
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 595010..606209

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG583_RS02845 (HG583_02835)	-	595066..595584 (-)	519	WP_202143273.1	replication regulatory RepB family protein	-
HG583_RS02850 (HG583_02840)	-	595581..596525 (-)	945	WP_000365304.1	CpaF/VirB11 family protein	-
HG583_RS02855 (HG583_02845)	-	596530..596802 (-)	273	WP_202143439.1	hypothetical protein	-
HG583_RS02860 (HG583_02850)	-	596820..597773 (-)	954	WP_202143274.1	hypothetical protein	-
HG583_RS02865 (HG583_02855)	-	597786..600026 (-)	2241	WP_202143275.1	collagen-like protein	-
HG583_RS02870 (HG583_02860)	comB10	600010..601209 (-)	1200	WP_202143276.1	DNA type IV secretion system protein ComB10	Machinery gene
HG583_RS02875 (HG583_02865)	-	601206..602720 (-)	1515	Protein_565	TrbG/VirB9 family P-type conjugative transfer protein	-
HG583_RS02880 (HG583_02870)	-	602761..603156 (-)	396	Protein_566	hypothetical protein	-
HG583_RS08345	-	603149..603289 (-)	141	WP_000789926.1	hypothetical protein	-
HG583_RS02885 (HG583_02875)	-	603286..605797 (-)	2512	Protein_568	VirB4 family type IV secretion/conjugal transfer ATPase	-
HG583_RS02890 (HG583_02880)	-	605778..606033 (-)	256	Protein_569	hypothetical protein	-

Sequence

Protein

• Length: 399 a.a.
• Molecular weight: 44540.16 Da
• Isoelectric Point: 9.9998

>NTDB_id=439538 HG583_RS02870 WP_202143276.1 600010..601209(-) (comB10) [Helicobacter pylori strain LIM-010]
MNKSLLKKIGLVIGGFGVLMALGLLANKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKKEESPKTTTTPQPTAPTTA
NVSTNPIITDYSHLNNNLNRQHNTLTHLQQVLQSPPKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFTNL
KYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNDNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTTTLSNGLLIGITSALANNQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQILRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLITTKEEINNEEEI

Nucleotide

• Length: 1200 bp

>NTDB_id=439538 HG583_RS02870 WP_202143276.1 600010..601209(-) (comB10) [Helicobacter pylori strain LIM-010]
ATGAATAAATCCTTGCTTAAAAAGATAGGCTTAGTTATAGGGGGCTTTGGTGTTTTAATGGCATTAGGACTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGCGAGAGTAAATTCCCCTTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCTAAAAAAGAAGAAAGCCCCAAAACAACAACCACGCCACAACCTACAGCTCCAACTACTGCT
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAATAATCTAAACAGGCAACATAACACCCTTACGCA
TTTACAACAAGTTTTACAAAGCCCCCCTAAAATAAAGCCTAAACCAAAACATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCCTTAGAGCCAACTAAACCAGCTACTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTACTAATTTA
AAATATAAAGACATTGGCACTAATGAGCATAAGCTCTTAAGAACTATAACCGCCGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCTCAAGTAGAGAGCGATATTTTTGCCTCTATGGGTAGAGCGG
TGCTAATCCCTAAAGGCTCTAAGGTTATAGGCTATTACAACAACGATAATCAAATCGGACAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATCAATATCATGCTCACTAACGCAAGGGGGGCTGATGTGAAGGGTTATAATGG
CTTAGTAGGCAAATACATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACCACCACGCTTTCTAATGGGCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATAACCAAAACAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTATTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTCATCAATCAAATACTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTATTTATTAGCCCTAATTTAGACATTTTTATCCCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCCCTAATCACAACAAAAGAGGAAATTAACAATGAAGAAGAAATCTAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.652	99.499	0.534