Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HG583_RS00090 Genome accession   NZ_CP051533
Coordinates   13718..13999 (+) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-010     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8718..18999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG583_RS00070 (HG583_00070) groES 9285..9641 (-) 357 WP_033767138.1 co-chaperone GroES -
  HG583_RS00075 (HG583_00075) dnaG 9923..11602 (+) 1680 WP_202142975.1 DNA primase -
  HG583_RS00080 (HG583_00080) - 11599..12651 (+) 1053 WP_202142976.1 MnmA/TRMU family protein -
  HG583_RS00085 (HG583_00085) - 12744..13571 (+) 828 WP_202142977.1 DUF5718 family protein -
  HG583_RS00090 (HG583_00090) comB2 13718..13999 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  HG583_RS00095 (HG583_00095) comB3 13999..14262 (+) 264 WP_000584973.1 hypothetical protein Machinery gene
  HG583_RS00100 (HG583_00100) comB4 14264..16627 (+) 2364 WP_202142978.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HG583_RS00110 (HG583_00110) - 16839..18269 (+) 1431 WP_202142979.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=439526 HG583_RS00090 WP_001272690.1 13718..13999(+) (comB2) [Helicobacter pylori strain LIM-010]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=439526 HG583_RS00090 WP_001272690.1 13718..13999(+) (comB2) [Helicobacter pylori strain LIM-010]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGTTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCCATTT
ATGTGTGGAGGAATTTGGACCGGTGGAAAGAGATCTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1