Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   HF916_RS29880 Genome accession   NZ_CP051516
Coordinates   399968..401479 (-) Length   503 a.a.
NCBI ID   WP_168792504.1    Uniprot ID   -
Organism   Paraburkholderia aromaticivorans strain AR20-38     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 394968..406479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF916_RS29860 hprK 395875..396843 (-) 969 WP_168792501.1 HPr(Ser) kinase/phosphatase -
  HF916_RS29865 - 396971..397486 (-) 516 WP_168792502.1 PTS sugar transporter subunit IIA -
  HF916_RS29875 raiA 399441..399797 (-) 357 WP_168792503.1 ribosome-associated translation inhibitor RaiA -
  HF916_RS29880 rpoN/rpoN1 399968..401479 (-) 1512 WP_168792504.1 RNA polymerase factor sigma-54 Machinery gene
  HF916_RS29885 lptB 401667..402452 (-) 786 WP_168792505.1 LPS export ABC transporter ATP-binding protein -
  HF916_RS29890 lptA 402449..403120 (-) 672 WP_168792506.1 lipopolysaccharide transport periplasmic protein LptA -
  HF916_RS29895 lptC 403141..403749 (-) 609 WP_012431662.1 LPS export ABC transporter periplasmic protein LptC -
  HF916_RS29900 - 403746..404306 (-) 561 WP_168792507.1 HAD family hydrolase -
  HF916_RS29905 kdsD 404306..405289 (-) 984 WP_168792508.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55220.33 Da        Isoelectric Point: 5.0706

>NTDB_id=439427 HF916_RS29880 WP_168792504.1 399968..401479(-) (rpoN/rpoN1) [Paraburkholderia aromaticivorans strain AR20-38]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAISQNPLLENEDDWIASPLRVAADGSLIAQAPNSSAPPDQM
GGNTSSSSSSERAENGEPQGVDEYNGLAGDGNGDASQWNLDDYGRSGNASDDDDLPPLQIHESSTSLRDHLMAQLRVTQA
GQRDRALITFLIESLDDDGYLAATLEEVLADLPEELEVDLDEMNAALALLHSFDPAGVGARSASECLKLQLLRLDGSPTR
TLALDIVAHHLELLAARDFTRLRKHLKANDDDLRDAHVLIRSLEPFPGAAYGKAEADYVVPDIMVRKTAQGWQAELNPEV
VPKLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKSFFVHGEIAMRPLVLREIADT
LGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAENPKSPLSDSRIAELLAEQGFVV
ARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=439427 HF916_RS29880 WP_168792504.1 399968..401479(-) (rpoN/rpoN1) [Paraburkholderia aromaticivorans strain AR20-38]
ATGAAAGCCAGCCTCCAACTCCGCCTATCGCAGCATCTTGCGCTGACGCCGCAACTGCAGCAGTCCATCCGGCTGCTTCA
GTTGTCTACGCTCGAATTGCAGCAAGAAGTCGCAATGGCGATCTCGCAGAATCCACTCCTCGAAAACGAGGACGACTGGA
TCGCGAGCCCGTTGCGCGTAGCGGCCGACGGCTCGCTGATCGCGCAGGCGCCCAACTCTTCCGCGCCGCCCGACCAGATG
GGCGGCAATACATCGTCCTCGTCCAGCAGCGAGCGCGCCGAGAACGGCGAGCCGCAGGGCGTCGACGAATACAACGGCCT
CGCGGGCGACGGTAACGGCGACGCGTCGCAATGGAATCTCGACGACTACGGCCGCTCCGGCAACGCCTCGGACGACGACG
ATCTTCCGCCGCTGCAAATCCACGAATCGAGCACCTCGCTGCGCGATCACCTGATGGCGCAATTGCGCGTCACCCAGGCG
GGCCAGCGCGATCGGGCGCTGATCACTTTCCTGATCGAATCACTCGACGACGACGGCTACCTTGCCGCCACGCTCGAAGA
AGTGCTGGCCGATCTGCCCGAAGAGCTCGAAGTCGATCTCGACGAAATGAACGCCGCGCTTGCGCTGCTGCATAGCTTCG
ACCCGGCCGGGGTCGGCGCGCGCTCCGCGTCGGAATGTCTCAAGCTGCAATTATTGCGGCTCGATGGCTCGCCTACGCGT
ACGCTCGCGCTCGACATCGTCGCCCACCATCTGGAACTGCTCGCGGCGCGCGATTTCACGCGTCTGCGCAAGCATCTGAA
GGCCAACGACGACGATCTGCGTGATGCGCATGTGCTGATCCGCTCGCTCGAGCCGTTTCCCGGCGCCGCCTACGGCAAGG
CCGAAGCGGACTATGTCGTGCCGGACATCATGGTGCGCAAAACGGCACAGGGCTGGCAGGCCGAGCTGAACCCGGAAGTC
GTGCCGAAGCTGCGCATTAACCATCTATACGCGAATATTCTGCGCAATAACCGGGGCGATCCGGGCAGTGGTTCGTTGCG
CCAGCAACTGCAGGAAGCGCGTTGGTTGATCAAAAATATCCAGCAGCGTTTCGAGACGATTCTGCGCGTCGCGCAGGCAA
TTGTGGAACGTCAGAAGAGCTTTTTTGTCCACGGCGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATTGCTGATACG
CTGGGCCTACACGAGTCAACTGTCTCGCGTGTGACAACCGGTAAATACATGCTGACCCCATTCGGGACGCTTGAATTTAA
GTACTTCTTCGGATCACACGTTTCGACTGACACGGGCGGCGCGGCGTCTTCAACGGCGATCCGCGCGCTCATCAAGCAAC
TGATAGGAGCGGAAAACCCGAAATCTCCTCTTTCAGACAGTCGCATAGCCGAACTGCTGGCGGAACAGGGCTTCGTGGTC
GCACGGCGTACCGTTGCGAAGTATCGTGAAGCTCTTAAGATCCCCGCAGTCAACCTGCGCAAGTCTCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(139-330)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(346-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

66.405

100

0.672