Detailed information NTG0439424

Bioinformatically predicted

Overview

• Name: radA/sms
• Type: Machinery gene
• Locus tag: INP70_RS02710
• Genome accession: NZ_CP063420
• Coordinates: 584635..586011 (+)
• Length: 458 a.a.
• NCBI ID: WP_032074635.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain VC_hf7
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 579635..591011

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INP70_RS02695	-	580254..580877 (-)	624	WP_000349088.1	YtjB family periplasmic protein	-
INP70_RS02700	serB	580980..581960 (+)	981	WP_000339689.1	phosphoserine phosphatase	-
INP70_RS02705	-	582165..584504 (-)	2340	WP_001187855.1	PilZ domain-containing protein	-
INP70_RS02710	radA/sms	584635..586011 (+)	1377	WP_032074635.1	DNA repair protein RadA	Machinery gene
INP70_RS02715	fusA	586282..588369 (+)	2088	WP_000774532.1	elongation factor G	-
INP70_RS02720	-	588483..590168 (-)	1686	WP_000615858.1	AMP-binding protein	-

Sequence

Protein

• Length: 458 a.a.
• Molecular weight: 49297.90 Da
• Isoelectric Point: 7.6828

>NTDB_id=439424 INP70_RS02710 WP_032074635.1 584635..586011(+) (radA/sms) [Vibrio cholerae strain VC_hf7]
MVKAKRAYVCNECGADFPRWQGQCNACGSWNSISEVRLAASPQVARNERLVGYAGALEAKVQTLADIDLQEVPRFTSGFK
ELDRVLGGGIVPGAAILIGGNPGAGKSTLLLQTMCLLSGQMPTLYVTGEESLQQVAMRASRLGLPKQHLKMLSETNVDRI
CQIAEQEKPRIMVIDSIQVMHVADVQSSPGSVAQVRESATALTRYAKQNNVAVFIVGHVTKDGTLAGPKVLEHIIDCSIL
LDGDTDSRFRTLRSHKNRFGAVNELGVFAMTGQGMREVSNPSAIFLSRGEEATSGSSVMVVWEGTRPLLVEIQALVDYSQ
LANPRRVAVGLEQNRLSLLLAVLHKHGGLQMADQDVFVNVVGGVKVTETSADLALLMALLSSFRDRPLPKDVVVFGEVGL
AGEIRPVPSGQERLNEAFKHGFKKAIVPIANMPKGGIEGMQIHGVKKLSDAIAAFDEL

Nucleotide

• Length: 1377 bp

>NTDB_id=439424 INP70_RS02710 WP_032074635.1 584635..586011(+) (radA/sms) [Vibrio cholerae strain VC_hf7]
ATTGTGAAAGCTAAGCGCGCCTATGTATGTAATGAATGTGGAGCGGATTTTCCGCGTTGGCAAGGACAGTGTAATGCCTG
TGGTTCGTGGAATTCGATTTCAGAAGTTCGTTTAGCGGCTTCACCGCAAGTGGCGCGCAATGAAAGGTTAGTCGGTTATG
CGGGAGCCCTTGAAGCGAAAGTACAAACTTTGGCTGATATTGATTTACAAGAAGTGCCTCGATTCACCAGTGGCTTTAAA
GAACTAGATCGCGTACTCGGCGGCGGAATTGTGCCGGGTGCTGCGATTTTGATTGGTGGTAATCCGGGCGCGGGTAAATC
GACCTTACTACTGCAAACCATGTGTTTACTTTCCGGACAGATGCCGACGTTGTACGTGACGGGCGAAGAATCGTTGCAGC
AGGTCGCGATGCGTGCTTCACGGCTTGGTTTGCCTAAACAGCATCTAAAAATGCTCTCAGAAACCAATGTGGATCGGATT
TGCCAGATTGCTGAGCAAGAAAAGCCGCGCATTATGGTCATCGATTCGATTCAAGTGATGCATGTGGCGGATGTGCAATC
GTCACCGGGGAGTGTCGCGCAAGTGCGTGAGTCGGCCACGGCGCTTACGCGTTATGCTAAACAAAATAATGTGGCGGTAT
TTATTGTCGGCCACGTAACCAAAGATGGTACGTTGGCGGGACCTAAAGTTCTTGAACACATCATCGATTGCTCGATTCTG
CTTGATGGTGATACCGACAGTCGTTTTCGTACACTTCGTAGTCATAAAAACCGTTTTGGTGCGGTCAATGAACTCGGTGT
GTTTGCGATGACTGGACAAGGGATGCGTGAGGTGAGTAATCCATCGGCGATTTTCCTTTCTCGTGGAGAAGAAGCGACAT
CTGGTAGCTCAGTGATGGTGGTGTGGGAAGGAACTCGCCCACTCTTAGTCGAGATTCAAGCTTTGGTCGATTACTCACAA
CTCGCTAACCCAAGACGCGTGGCGGTTGGCTTAGAACAAAACCGTCTCTCTTTATTACTGGCCGTGCTGCATAAACACGG
TGGTTTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTAGTCGGTGGCGTGAAAGTGACGGAGACCAGTGCAGATTTAG
CGCTACTCATGGCGTTATTGTCGAGTTTTCGTGATCGTCCGCTGCCAAAAGATGTCGTGGTTTTTGGTGAAGTCGGATTG
GCCGGAGAAATTCGTCCCGTACCCAGTGGTCAAGAGCGCCTTAACGAAGCCTTCAAACATGGTTTTAAGAAAGCGATTGT
GCCGATTGCCAATATGCCGAAAGGTGGTATTGAAGGTATGCAGATCCACGGTGTGAAAAAGCTTTCTGATGCGATCGCGG
CTTTTGATGAGCTGTAA

Domains

Predicted by InterProScan.

• Subunit ChlI of Mg-chelatase (ChlI) (346-431)

• AAA domain (AAA_25) (81-223)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA/sms	Bacillus subtilis subsp. subtilis str. 168	43.818	100	0.441
radA	Streptococcus mitis NCTC 12261	45.093	93.45	0.421
radA	Streptococcus pneumoniae Rx1	45.093	93.45	0.421
radA	Streptococcus pneumoniae D39	45.093	93.45	0.421
radA	Streptococcus pneumoniae R6	45.093	93.45	0.421
radA	Streptococcus pneumoniae TIGR4	45.093	93.45	0.421
radA	Streptococcus mitis SK321	45.093	93.45	0.421