Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HG557_RS07135 Genome accession   NZ_CP051510
Coordinates   1489024..1489599 (-) Length   191 a.a.
NCBI ID   WP_202165970.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-008     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1484024..1494599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG557_RS07125 (HG557_07120) - 1485704..1486955 (-) 1252 Protein_1391 restriction endonuclease subunit S -
  HG557_RS07130 (HG557_07125) - 1486952..1488991 (-) 2040 WP_202165969.1 N-6 DNA methylase -
  HG557_RS07135 (HG557_07130) comFC 1489024..1489599 (-) 576 WP_202165970.1 ComF family protein Machinery gene
  HG557_RS07140 (HG557_07135) tmk 1489587..1490162 (-) 576 WP_202165972.1 dTMP kinase -
  HG557_RS07145 (HG557_07140) coaD 1490164..1490637 (-) 474 WP_202135527.1 pantetheine-phosphate adenylyltransferase -
  HG557_RS07150 (HG557_07145) - 1490637..1491200 (-) 564 WP_202132810.1 UbiX family flavin prenyltransferase -
  HG557_RS07155 (HG557_07150) flgA 1491210..1491866 (-) 657 WP_202135528.1 flagellar basal body P-ring formation chaperone FlgA -
  HG557_RS07160 (HG557_07155) uvrD 1491863..1493908 (-) 2046 WP_202135529.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21279.92 Da        Isoelectric Point: 9.2848

>NTDB_id=439403 HG557_RS07135 WP_202165970.1 1489024..1489599(-) (comFC) [Helicobacter pylori strain ASHA-008]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSLKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRASNAVSYAGKRLEFRANNPRNFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=439403 HG557_RS07135 WP_202165970.1 1489024..1489599(-) (comFC) [Helicobacter pylori strain ASHA-008]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCTAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTTCTAATGCTGTTTCGTATGCCGGGAAAAGATTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACTCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCGATCGCACTTTG
CAGTGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

95.812

100

0.958