Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HG558_RS06640 Genome accession   NZ_CP051509
Coordinates   1365010..1366323 (-) Length   437 a.a.
NCBI ID   WP_202166578.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-009     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1360010..1371323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG558_RS06610 (HG558_06590) nadC 1360473..1361294 (-) 822 WP_000404043.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HG558_RS06615 (HG558_06595) nadA 1361294..1362304 (-) 1011 WP_202166575.1 quinolinate synthase NadA -
  HG558_RS06620 (HG558_06600) - 1362294..1363097 (-) 804 WP_202166576.1 phosphatidylserine decarboxylase -
  HG558_RS06625 (HG558_06605) - 1363094..1363597 (-) 504 WP_000953078.1 hypothetical protein -
  HG558_RS06630 (HG558_06610) - 1363610..1364104 (-) 495 WP_052937398.1 hypothetical protein -
  HG558_RS06635 (HG558_06615) mqnP 1364097..1364981 (-) 885 WP_202166577.1 menaquinone biosynthesis prenyltransferase MqnP -
  HG558_RS06640 (HG558_06620) comEC/comE3 1365010..1366323 (-) 1314 WP_202166578.1 ComEC/Rec2 family competence protein Machinery gene
  HG558_RS06645 (HG558_06625) - 1366320..1367786 (-) 1467 WP_202166579.1 replicative DNA helicase -
  HG558_RS06650 (HG558_06630) - 1367806..1369200 (-) 1395 WP_202166580.1 NAD(P)H-hydrate dehydratase -
  HG558_RS06655 (HG558_06635) crdS 1369203..1370405 (-) 1203 WP_202167104.1 copper-sensing histidine kinase CrdS -
  HG558_RS06660 (HG558_06640) crdR 1370371..1371012 (-) 642 WP_202166581.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50155.11 Da        Isoelectric Point: 9.8366

>NTDB_id=439380 HG558_RS06640 WP_202166578.1 1365010..1366323(-) (comEC/comE3) [Helicobacter pylori strain ASHA-009]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRDFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
ALIFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDRILNMPLTIPTISISSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=439380 HG558_RS06640 WP_202166578.1 1365010..1366323(-) (comEC/comE3) [Helicobacter pylori strain ASHA-009]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATATTTGCTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTAGAGTCTTTAAGATCATGCTTTTTCCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCGACTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGCAATTTATACCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGACCTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAATTTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCGCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCAATCTCTTCGCCTTTGTGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTCTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947