Detailed information NTG0439371

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HG558_RS00215
• Genome accession: NZ_CP051509
• Coordinates: 37361..38497 (+)
• Length: 378 a.a.
• NCBI ID: WP_202166724.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain ASHA-009
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 32361..43497

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG558_RS00180 (HG558_00180)	panD	32813..33163 (+)	351	WP_202166720.1	aspartate 1-decarboxylase	-
HG558_RS00185 (HG558_00185)	-	33174..33476 (+)	303	WP_000347918.1	YbaB/EbfC family nucleoid-associated protein	-
HG558_RS00190 (HG558_00190)	-	33476..34471 (+)	996	WP_202166721.1	PDZ domain-containing protein	-
HG558_RS00195 (HG558_00195)	comB6	34479..35534 (+)	1056	WP_202167069.1	P-type conjugative transfer protein TrbL	Machinery gene
HG558_RS00200 (HG558_00200)	comB7	35550..35663 (+)	114	WP_001218100.1	hypothetical protein	Machinery gene
HG558_RS00205 (HG558_00205)	comB8	35660..36403 (+)	744	WP_202166722.1	virB8 family protein	Machinery gene
HG558_RS00210 (HG558_00210)	comB9	36403..37368 (+)	966	WP_202166723.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG558_RS00215 (HG558_00215)	comB10	37361..38497 (+)	1137	WP_202166724.1	DNA type IV secretion system protein ComB10	Machinery gene
HG558_RS00220 (HG558_00220)	-	38567..39979 (+)	1413	WP_202166725.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HG558_RS00225 (HG558_00225)	gmd	39994..41139 (+)	1146	WP_000659855.1	GDP-mannose 4,6-dehydratase	-
HG558_RS00230 (HG558_00230)	-	41132..42064 (+)	933	WP_001002423.1	GDP-L-fucose synthase	-
HG558_RS00235 (HG558_00235)	hypE	42372..43370 (-)	999	WP_202166726.1	hydrogenase expression/formation protein HypE	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42241.91 Da
• Isoelectric Point: 9.9637

>NTDB_id=439371 HG558_RS00215 WP_202166724.1 37361..38497(+) (comB10) [Helicobacter pylori strain ASHA-009]
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKNPPIDLKANTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEYATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=439371 HG558_RS00215 WP_202166724.1 37361..38497(+) (comB10) [Helicobacter pylori strain ASHA-009]
ATGAATAAGTGGCTTAAGGGGGCACTTGTTTTTGTAGGGGGTTTTGCAACGATCATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAGCCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTCTTCTAAAGAAGAAACTTTTAAGAACCCTCCCATAGATTTAAAAGC
AAACACAACCCCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTATGGATAACCCTAAAGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGTTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAATATGCGACTAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATTGCTCCTATTGTGGT
GATTAGAGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATTTTCTTTCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAATAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.296	100	0.963