Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HG558_RS00095 Genome accession   NZ_CP051509
Coordinates   13757..14020 (+) Length   87 a.a.
NCBI ID   WP_202166711.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-009     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8757..19020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG558_RS00070 (HG558_00070) groES 9052..9408 (-) 357 WP_202132903.1 co-chaperone GroES -
  HG558_RS00075 (HG558_00075) dnaG 9683..11362 (+) 1680 WP_202166708.1 DNA primase -
  HG558_RS00080 (HG558_00080) - 11359..12411 (+) 1053 WP_202166709.1 MnmA/TRMU family protein -
  HG558_RS00085 (HG558_00085) - 12503..13330 (+) 828 WP_202166710.1 DUF5718 family protein -
  HG558_RS00090 (HG558_00090) comB2 13476..13757 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HG558_RS00095 (HG558_00095) comB3 13757..14020 (+) 264 WP_202166711.1 competence protein ComB Machinery gene
  HG558_RS00100 (HG558_00100) comB4 14022..16385 (+) 2364 WP_202166712.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HG558_RS00110 (HG558_00110) - 16597..18027 (+) 1431 WP_202166713.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10036.11 Da        Isoelectric Point: 9.5290

>NTDB_id=439365 HG558_RS00095 WP_202166711.1 13757..14020(+) (comB3) [Helicobacter pylori strain ASHA-009]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFSPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=439365 HG558_RS00095 WP_202166711.1 13757..14020(+) (comB3) [Helicobacter pylori strain ASHA-009]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTTCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATCTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

97.701

100

0.977