Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HG558_RS00090 Genome accession   NZ_CP051509
Coordinates   13476..13757 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain ASHA-009     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8476..18757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG558_RS00070 (HG558_00070) groES 9052..9408 (-) 357 WP_202132903.1 co-chaperone GroES -
  HG558_RS00075 (HG558_00075) dnaG 9683..11362 (+) 1680 WP_202166708.1 DNA primase -
  HG558_RS00080 (HG558_00080) - 11359..12411 (+) 1053 WP_202166709.1 MnmA/TRMU family protein -
  HG558_RS00085 (HG558_00085) - 12503..13330 (+) 828 WP_202166710.1 DUF5718 family protein -
  HG558_RS00090 (HG558_00090) comB2 13476..13757 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HG558_RS00095 (HG558_00095) comB3 13757..14020 (+) 264 WP_202166711.1 competence protein ComB Machinery gene
  HG558_RS00100 (HG558_00100) comB4 14022..16385 (+) 2364 WP_202166712.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HG558_RS00110 (HG558_00110) - 16597..18027 (+) 1431 WP_202166713.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=439364 HG558_RS00090 WP_001272686.1 13476..13757(+) (comB2) [Helicobacter pylori strain ASHA-009]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=439364 HG558_RS00090 WP_001272686.1 13476..13757(+) (comB2) [Helicobacter pylori strain ASHA-009]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGCTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTGGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989