Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HG559_RS06740 Genome accession   NZ_CP051508
Coordinates   1397800..1399113 (-) Length   437 a.a.
NCBI ID   WP_202136200.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-010     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1392800..1404113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG559_RS06710 (HG559_06715) nadC 1393263..1394084 (-) 822 WP_202165917.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HG559_RS06715 (HG559_06720) nadA 1394084..1395094 (-) 1011 WP_001141821.1 quinolinate synthase NadA -
  HG559_RS06720 (HG559_06725) - 1395081..1395887 (-) 807 WP_202165919.1 phosphatidylserine decarboxylase -
  HG559_RS06725 (HG559_06730) - 1395884..1396387 (-) 504 WP_202145720.1 helix-turn-helix domain-containing protein -
  HG559_RS06730 (HG559_06735) - 1396400..1396894 (-) 495 WP_012443434.1 hypothetical protein -
  HG559_RS06735 (HG559_06740) mqnP 1396887..1397771 (-) 885 WP_202148099.1 menaquinone biosynthesis prenyltransferase MqnP -
  HG559_RS06740 (HG559_06745) comEC/comE3 1397800..1399113 (-) 1314 WP_202136200.1 ComEC/Rec2 family competence protein Machinery gene
  HG559_RS06745 (HG559_06750) - 1399110..1400576 (-) 1467 WP_202165921.1 replicative DNA helicase -
  HG559_RS06750 (HG559_06755) - 1400587..1401981 (-) 1395 WP_202165923.1 NAD(P)H-hydrate dehydratase -
  HG559_RS06755 (HG559_06760) crdS 1401984..1403186 (-) 1203 WP_202166301.1 copper-sensing histidine kinase CrdS -
  HG559_RS06760 (HG559_06765) crdR 1403152..1403793 (-) 642 WP_202165925.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50208.21 Da        Isoelectric Point: 9.8315

>NTDB_id=439360 HG559_RS06740 WP_202136200.1 1397800..1399113(-) (comEC/comE3) [Helicobacter pylori strain ASHA-010]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSTHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
ALIFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDPILSMPLTIPTISISSPLWLLGVHLFLT
ILSTRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=439360 HG559_RS06740 WP_202136200.1 1397800..1399113(-) (comEC/comE3) [Helicobacter pylori strain ASHA-010]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATATTTGCTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAATCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGTTC
GTTTTTGGAGTCTTTAAAATCATGCTTTTTCCAAACTTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCACTCATTCAAACGCTTTAGTGGGTAATTTATACCGCGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGATTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAATTTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCCCA
TTTTAAGCATGCCTTTAACAATCCCTACGATTTCAATCTCTTCGCCTTTGTGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTCTAAGCACGCGTTTCTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.423

100

0.954