Detailed information NTG0439342

Bioinformatically predicted

Overview

• Name: comH
• Type: Machinery gene
• Locus tag: HG560_RS07560
• Genome accession: NZ_CP051507
• Coordinates: 1586920..1588353 (-)
• Length: 477 a.a.
• NCBI ID: WP_000751670.1
• Uniprot ID: A0AAE7P6A4
• Organism: Helicobacter pylori strain SHIM-002
• Function: import of DNA into the periplasm (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1581920..1593353

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG560_RS07535 (HG560_07515)	recG	1583063..1584928 (-)	1866	WP_001158333.1	ATP-dependent DNA helicase RecG	-
HG560_RS07540 (HG560_07520)	-	1585010..1585354 (+)	345	WP_000837020.1	hypothetical protein	-
HG560_RS07545 (HG560_07525)	-	1585358..1585993 (+)	636	WP_000668049.1	outer membrane protein	-
HG560_RS07550 (HG560_07530)	-	1585990..1586742 (-)	753	WP_000767499.1	exodeoxyribonuclease III	-
HG560_RS07560 (HG560_07540)	comH	1586920..1588353 (-)	1434	WP_000751670.1	hypothetical protein	Machinery gene
HG560_RS07565 (HG560_07545)	dnaA	1588573..1589940 (-)	1368	WP_000380574.1	chromosomal replication initiator protein DnaA	-
HG560_RS07570 (HG560_07550)	-	1590093..1590629 (+)	537	WP_014662167.1	purine-nucleoside phosphorylase	-
HG560_RS07575 (HG560_07555)	-	1590676..1590915 (+)	240	WP_000461845.1	DUF2443 domain-containing protein	-
HG560_RS07580 (HG560_07560)	glmS	1590916..1592709 (+)	1794	WP_000334329.1	glutamine--fructose-6-phosphate transaminase (isomerizing)	-

Sequence

Protein

• Length: 477 a.a.
• Molecular weight: 54705.53 Da
• Isoelectric Point: 7.1210

>NTDB_id=439342 HG560_RS07560 WP_000751670.1 1586920..1588353(-) (comH) [Helicobacter pylori strain SHIM-002]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKESHQMPSLNAPIQKPQNKPTPSQQPLQNFSYPESKLDSKNPKNSLLQPLAT
PNKTSSANEVKTPTNDTKPPLKHSSQDQENNLFVTPPTEKTLPNNTPNADINEHNESNENRDNAEKQAVRDPNVREFACG
KWVYDDENLQAYRPSILKRVDENKQTATDITPCDYSNAENKSGKITTPYTKISVQKTEPLEEPQTFEAKNNFTILQARSS
TEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAVYERPKQDDQTEPTFYETSELAYSSTRKSEITRNELNL
NEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide

• Length: 1434 bp

>NTDB_id=439342 HG560_RS07560 WP_000751670.1 1586920..1588353(-) (comH) [Helicobacter pylori strain SHIM-002]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAAGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCCAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGTCACACCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAACAAACCCACTCCATCGCAACAAC
CTCTTCAAAACTTTTCTTACCCAGAGTCCAAACTAGACTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTAGCCACT
CCTAATAAAACAAGTTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTCACAAGA
TCAAGAAAACAACCTCTTTGTAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATATTAATGAAC
ACAATGAAAGCAATGAGAATAGGGATAATGCGGAAAAACAAGCCGTTAGAGATCCTAATGTTAGAGAATTTGCGTGCGGG
AAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAGCGCGTTGATGAAAACAAACAGACTGC
GACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTG
TTCAAAAAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGAAGCTCT
ACAGAAAAATGCAAAAGGGCCAGAGCGCGAAAAGACGGCACGACTAGGCAATGCTATCTGATAGAAGAGCCTTTAAAACA
AGCGTGGGAGAGCGAGTATGAAATCACCACGCAATTAGTGAAAGCTGTATATGAGCGCCCCAAACAAGACGATCAAACAG
AGCCGACTTTCTATGAAACCAGCGAACTAGCTTATTCTTCCACACGAAAAAGCGAAATAACGCGCAATGAATTGAATTTG
AATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCCAAAA
GCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comH	Helicobacter pylori 26695	91.649	100	0.92