Detailed information NTG0439320

Bioinformatically predicted

Overview

• Name: comH
• Type: Machinery gene
• Locus tag: HG561_RS07270
• Genome accession: NZ_CP051506
• Coordinates: 1509996..1511435 (-)
• Length: 479 a.a.
• NCBI ID: WP_202168430.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain SHIM-007
• Function: import of DNA into the periplasm (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1504996..1516435

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG561_RS07245 (HG561_07235)	recG	1506138..1508003 (-)	1866	WP_202168426.1	ATP-dependent DNA helicase RecG	-
HG561_RS07250 (HG561_07240)	-	1508085..1508429 (+)	345	WP_202168427.1	hypothetical protein	-
HG561_RS07255 (HG561_07245)	-	1508433..1509068 (+)	636	WP_202168428.1	outer membrane protein	-
HG561_RS07260 (HG561_07250)	-	1509065..1509817 (-)	753	WP_202168429.1	exodeoxyribonuclease III	-
HG561_RS07270 (HG561_07260)	comH	1509996..1511435 (-)	1440	WP_202168430.1	competence protein	Machinery gene
HG561_RS07275 (HG561_07265)	dnaA	1511656..1513023 (-)	1368	WP_000380574.1	chromosomal replication initiator protein DnaA	-
HG561_RS07280 (HG561_07270)	-	1513176..1513712 (+)	537	WP_014662167.1	purine-nucleoside phosphorylase	-
HG561_RS07285 (HG561_07275)	-	1513759..1513998 (+)	240	WP_000461845.1	DUF2443 domain-containing protein	-
HG561_RS07290 (HG561_07280)	glmS	1513999..1515792 (+)	1794	WP_202168431.1	glutamine--fructose-6-phosphate transaminase (isomerizing)	-

Sequence

Protein

• Length: 479 a.a.
• Molecular weight: 54905.81 Da
• Isoelectric Point: 7.0008

>NTDB_id=439320 HG561_RS07270 WP_202168430.1 1509996..1511435(-) (comH) [Helicobacter pylori strain SHIM-007]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPKQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKELHPHQMPSLNAPIQKPQNKPTPSQQSLQNFSYPESKLGSKNPKNSLLQPL
ATPNKTSSANEVKTPTNDTKPPLKHPSEDQENNLFVTPPTEKTLPNNTPNADINEHNESNENRDNAEKQAVRDPNVREFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQTEPTFYETSELAYSSTRKSEITRNEL
SLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKRGNYLFNEV

Nucleotide

• Length: 1440 bp

>NTDB_id=439320 HG561_RS07270 WP_202168430.1 1509996..1511435(-) (comH) [Helicobacter pylori strain SHIM-007]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAAGCTAAAGTCCTTGATTCTAAAGAACCAAAACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCTACACCCGCACCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAACAAACCCACTCCATCGC
AACAATCTCTTCAAAACTTTTCTTATCCAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTA
GCCACTCCTAATAAAACAAGTTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATCCTTC
AGAAGATCAAGAAAACAACCTCTTTGTAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATATTA
ATGAACACAATGAAAGCAATGAGAATAGGGATAATGCGGAAAAACAAGCCGTTAGAGATCCTAATGTTAGAGAATTTGCG
TGCGGGAAGTGGGTCTATGATGATGAAAATTTACAAGCCTACCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCAACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTCCATAAAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCCAGAGCGCGAAAAGACGGCACGACTAGGCAATGCTATCTGATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCATTTATGAGCGCCCCAAACAAGACGATC
AAACAGAGCCGACTTTCTATGAAACCAGCGAACTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCGCAATGAATTG
AGTTTGAATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAGCCACGAG
CCAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTTTGTGTCAAAAGGGGGAATTATTTATTCAACGAAGTTTAA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comH	Helicobacter pylori 26695	91.858	100	0.919