Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HG561_RS06560 Genome accession   NZ_CP051506
Coordinates   1353552..1354865 (-) Length   437 a.a.
NCBI ID   WP_202168357.1    Uniprot ID   -
Organism   Helicobacter pylori strain SHIM-007     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1348552..1359865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG561_RS06530 (HG561_06520) nadC 1349015..1349836 (-) 822 WP_000404041.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HG561_RS06535 (HG561_06525) nadA 1349836..1350846 (-) 1011 WP_001141819.1 quinolinate synthase NadA -
  HG561_RS06540 (HG561_06530) - 1350836..1351639 (-) 804 WP_000561117.1 phosphatidylserine decarboxylase -
  HG561_RS06545 (HG561_06535) - 1351636..1352139 (-) 504 WP_202168356.1 helix-turn-helix domain-containing protein -
  HG561_RS06550 (HG561_06540) - 1352152..1352646 (-) 495 WP_014662023.1 hypothetical protein -
  HG561_RS06555 (HG561_06545) mqnP 1352639..1353523 (-) 885 WP_000913959.1 menaquinone biosynthesis prenyltransferase MqnP -
  HG561_RS06560 (HG561_06550) comEC/comE3 1353552..1354865 (-) 1314 WP_202168357.1 ComEC/Rec2 family competence protein Machinery gene
  HG561_RS06565 (HG561_06555) - 1354862..1356322 (-) 1461 WP_000349790.1 replicative DNA helicase -
  HG561_RS06570 (HG561_06560) - 1356342..1357736 (-) 1395 WP_202168358.1 NAD(P)H-hydrate dehydratase -
  HG561_RS06575 (HG561_06565) crdS 1357739..1358941 (-) 1203 WP_202168893.1 copper-sensing histidine kinase CrdS -
  HG561_RS06580 (HG561_06570) crdR 1358907..1359548 (-) 642 WP_202168359.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50132.06 Da        Isoelectric Point: 9.7790

>NTDB_id=439317 HG561_RS06560 WP_202168357.1 1353552..1354865(-) (comEC/comE3) [Helicobacter pylori strain SHIM-007]
MKDKTFQGAFELLATPKEYLLCGVVLSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTREQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYAPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALIFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDRILNMPLTIPTISISSPLWLLGVHLFLT
ILSTRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=439317 HG561_RS06560 WP_202168357.1 1353552..1354865(-) (comEC/comE3) [Helicobacter pylori strain SHIM-007]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTGTTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTTTAAAATCATGCTTTTTCCAAACTTATTCTTTTTCTTTAACACGGGAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGGAATTTATACCGCGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATGCCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAATTTTTTTAAACATGCTCATTATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCGCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCAATCTCTTCGCCTTTGTGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCACGCGTTTCTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-377)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945