Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   IPV38_RS00100 Genome accession   NZ_CP063396
Coordinates   21232..22257 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain ST167_d26burn     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 16232..27257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPV38_RS00075 (IPV38_00075) - 16420..16737 (-) 318 WP_003120685.1 tetratricopeptide repeat protein -
  IPV38_RS00080 (IPV38_00080) trkA 16886..18259 (-) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  IPV38_RS00085 (IPV38_00085) rsmB 18287..19591 (-) 1305 WP_003122291.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  IPV38_RS00090 (IPV38_00090) fmt 19588..20532 (-) 945 WP_017001989.1 methionyl-tRNA formyltransferase -
  IPV38_RS00095 (IPV38_00095) def 20587..21093 (-) 507 WP_003107059.1 peptide deformylase -
  IPV38_RS00100 (IPV38_00100) tsaP 21232..22257 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  IPV38_RS00105 (IPV38_00105) dprA 22392..23480 (+) 1089 WP_003123764.1 DNA-processing protein DprA Machinery gene
  IPV38_RS00110 (IPV38_00110) - 23521..24078 (+) 558 WP_003097300.1 Sua5/YciO/YrdC/YwlC family protein -
  IPV38_RS00115 (IPV38_00115) - 24088..25065 (-) 978 WP_003111202.1 NADPH:quinone reductase -
  IPV38_RS00120 (IPV38_00120) hemF 25256..26173 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  IPV38_RS00125 (IPV38_00125) aroE 26231..27055 (+) 825 WP_003111201.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=439299 IPV38_RS00100 WP_003097294.1 21232..22257(+) (tsaP) [Pseudomonas aeruginosa strain ST167_d26burn]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=439299 IPV38_RS00100 WP_003097294.1 21232..22257(+) (tsaP) [Pseudomonas aeruginosa strain ST167_d26burn]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACACTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTATGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393