Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HG563_RS06560 Genome accession   NZ_CP051504
Coordinates   1367481..1368794 (-) Length   437 a.a.
NCBI ID   WP_202171797.1    Uniprot ID   -
Organism   Helicobacter pylori strain SHIM-011     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1362481..1373794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG563_RS06530 (HG563_06530) nadC 1362944..1363765 (-) 822 WP_000404043.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HG563_RS06535 (HG563_06535) nadA 1363765..1364775 (-) 1011 WP_001141875.1 quinolinate synthase NadA -
  HG563_RS06540 (HG563_06540) - 1364765..1365568 (-) 804 WP_202273357.1 phosphatidylserine decarboxylase -
  HG563_RS06545 (HG563_06545) - 1365565..1366068 (-) 504 WP_000953080.1 hypothetical protein -
  HG563_RS06550 (HG563_06550) - 1366081..1366575 (-) 495 WP_202273358.1 hypothetical protein -
  HG563_RS06555 (HG563_06555) mqnP 1366568..1367452 (-) 885 WP_000913954.1 menaquinone biosynthesis prenyltransferase MqnP -
  HG563_RS06560 (HG563_06560) comEC/comE3 1367481..1368794 (-) 1314 WP_202171797.1 ComEC/Rec2 family competence protein Machinery gene
  HG563_RS06565 (HG563_06565) - 1368791..1370251 (-) 1461 WP_202273359.1 replicative DNA helicase -
  HG563_RS06570 (HG563_06570) - 1370271..1371665 (-) 1395 WP_202273360.1 NAD(P)H-hydrate dehydratase -
  HG563_RS06575 (HG563_06575) crdS 1371668..1372870 (-) 1203 WP_202273684.1 copper-sensing histidine kinase CrdS -
  HG563_RS06580 (HG563_06580) crdR 1372836..1373477 (-) 642 WP_001169800.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50239.27 Da        Isoelectric Point: 9.8860

>NTDB_id=439273 HG563_RS06560 WP_202171797.1 1367481..1368794(-) (comEC/comE3) [Helicobacter pylori strain SHIM-011]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDRILNMPLTIPTISVFSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=439273 HG563_RS06560 WP_202171797.1 1367481..1368794(-) (comEC/comE3) [Helicobacter pylori strain SHIM-011]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCACTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTATACCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
GTGCTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.652

100

0.957