Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HG564_RS06560 Genome accession   NZ_CP051503
Coordinates   1370858..1372171 (-) Length   437 a.a.
NCBI ID   WP_202171797.1    Uniprot ID   -
Organism   Helicobacter pylori strain SHIM-014     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1365858..1377171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG564_RS06530 (HG564_06525) nadC 1366321..1367142 (-) 822 WP_202171796.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HG564_RS06535 (HG564_06530) nadA 1367142..1368152 (-) 1011 WP_001141819.1 quinolinate synthase NadA -
  HG564_RS06540 (HG564_06535) - 1368142..1368945 (-) 804 WP_000561117.1 phosphatidylserine decarboxylase -
  HG564_RS06545 (HG564_06540) - 1368942..1369445 (-) 504 WP_000953080.1 hypothetical protein -
  HG564_RS06550 (HG564_06545) - 1369458..1369952 (-) 495 WP_014662023.1 hypothetical protein -
  HG564_RS06555 (HG564_06550) mqnP 1369945..1370829 (-) 885 WP_000913954.1 menaquinone biosynthesis prenyltransferase MqnP -
  HG564_RS06560 (HG564_06555) comEC/comE3 1370858..1372171 (-) 1314 WP_202171797.1 ComEC/Rec2 family competence protein Machinery gene
  HG564_RS06565 (HG564_06560) - 1372168..1373634 (-) 1467 WP_202171798.1 replicative DNA helicase -
  HG564_RS06570 (HG564_06565) - 1373654..1375048 (-) 1395 WP_000954043.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HG564_RS06575 (HG564_06570) crdS 1375051..1376253 (-) 1203 WP_202172351.1 copper-sensing histidine kinase CrdS -
  HG564_RS06580 (HG564_06575) crdR 1376219..1376860 (-) 642 WP_001169800.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50239.27 Da        Isoelectric Point: 9.8860

>NTDB_id=439252 HG564_RS06560 WP_202171797.1 1370858..1372171(-) (comEC/comE3) [Helicobacter pylori strain SHIM-014]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDRILNMPLTIPTISVFSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=439252 HG564_RS06560 WP_202171797.1 1370858..1372171(-) (comEC/comE3) [Helicobacter pylori strain SHIM-014]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTATACCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
GTGCTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.652

100

0.957