Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HG565_RS06655 Genome accession   NZ_CP051502
Coordinates   1395203..1396516 (-) Length   437 a.a.
NCBI ID   WP_202169345.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-001     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1395203..1414841 1395203..1396516 within 0


Gene organization within MGE regions


Location: 1395203..1414841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG565_RS06655 (HG565_06635) comEC/comE3 1395203..1396516 (-) 1314 WP_202169345.1 ComEC/Rec2 family competence protein Machinery gene
  HG565_RS06660 (HG565_06640) - 1396513..1397973 (-) 1461 WP_202169346.1 replicative DNA helicase -
  HG565_RS06665 (HG565_06645) - 1397985..1399379 (-) 1395 WP_202169347.1 NAD(P)H-hydrate dehydratase -
  HG565_RS06670 (HG565_06650) crdS 1399382..1400584 (-) 1203 WP_202170030.1 copper-sensing histidine kinase CrdS -
  HG565_RS06675 (HG565_06655) crdR 1400550..1401191 (-) 642 WP_202169348.1 copper response regulator transcription factor CrdR -
  HG565_RS06680 (HG565_06660) - 1401279..1402550 (-) 1272 WP_202169349.1 restriction endonuclease subunit R -
  HG565_RS06685 (HG565_06665) - 1402565..1403347 (-) 783 WP_202169350.1 site-specific DNA-methyltransferase -
  HG565_RS06690 (HG565_06670) - 1403334..1404197 (-) 864 WP_202169351.1 site-specific DNA-methyltransferase -
  HG565_RS06695 (HG565_06675) - 1404445..1406871 (+) 2427 WP_202169352.1 site-specific DNA-methyltransferase -
  HG565_RS06700 (HG565_06680) - 1406966..1407808 (+) 843 WP_078245658.1 EcoRV family type II restriction endonuclease -
  HG565_RS06705 (HG565_06685) - 1407808..1408701 (+) 894 WP_202169353.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  HG565_RS06710 (HG565_06690) - 1408673..1411132 (+) 2460 WP_202169354.1 site-specific DNA-methyltransferase -
  HG565_RS06715 (HG565_06695) - 1411142..1414045 (+) 2904 WP_202169355.1 DEAD/DEAH box helicase family protein -
  HG565_RS06720 (HG565_06700) mreC 1414095..1414841 (-) 747 WP_001213301.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50290.28 Da        Isoelectric Point: 9.8572

>NTDB_id=439231 HG565_RS06655 WP_202169345.1 1395203..1396516(-) (comEC/comE3) [Helicobacter pylori strain PUNO-001]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYSNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWFFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWHIFLFLKHTQAFFKTSSFLMRSFQVISLS
VLVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDPILNMPLTIPTISVFSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSASFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=439231 HG565_RS06655 WP_202169345.1 1395203..1396516(-) (comEC/comE3) [Helicobacter pylori strain PUNO-001]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTCGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAGATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCACTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGCAATTTATACCGCGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAATGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGTTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
TTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGCATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
GTGCTGGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTCTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGTTAGATCCCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTGTGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGAGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947