Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HG567_RS03395 Genome accession   NZ_CP051500
Coordinates   738767..739057 (-) Length   96 a.a.
NCBI ID   WP_021176075.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-003     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 733767..744057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG567_RS03375 (HG567_03360) - 734387..735553 (-) 1167 WP_202163995.1 VirB8/TrbF family protein -
  HG567_RS07760 - 735546..735680 (-) 135 WP_237393069.1 type IV secretion system protein VirB7 -
  HG567_RS03380 (HG567_03365) - 735682..738246 (-) 2565 WP_202163996.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  HG567_RS03385 (HG567_03370) - 738246..738482 (-) 237 WP_202140151.1 hypothetical protein -
  HG567_RS03390 (HG567_03375) comB3 738494..738757 (-) 264 WP_001177721.1 hypothetical protein Machinery gene
  HG567_RS03395 (HG567_03380) comB2 738767..739057 (-) 291 WP_021176075.1 TrbC/VirB2 family protein Machinery gene
  HG567_RS03400 (HG567_03385) - 739054..739533 (-) 480 WP_165508556.1 hypothetical protein -
  HG567_RS03405 (HG567_03390) - 739530..739754 (-) 225 WP_202140153.1 hypothetical protein -
  HG567_RS03410 (HG567_03395) - 739757..740545 (-) 789 WP_202163997.1 integrase -
  HG567_RS03415 (HG567_03400) - 740733..742133 (+) 1401 WP_202140154.1 hypothetical protein -
  HG567_RS03420 (HG567_03405) - 742185..742462 (+) 278 Protein_682 hypothetical protein -
  HG567_RS03425 (HG567_03410) - 742464..743726 (+) 1263 WP_202140155.1 P-type conjugative transfer protein TrbL -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10940.26 Da        Isoelectric Point: 11.1589

>NTDB_id=439185 HG567_RS03395 WP_021176075.1 738767..739057(-) (comB2) [Helicobacter pylori strain PUNO-003]
MKKLRHFRKLIAFLGFSPLLLQADITTFFNSIEQQLQSPTGKGILMIIFIAIGIFVWKNLDRWKEILLTILGVVLGTLIF
FKAPALAQWFMTSVGN

Nucleotide


Download         Length: 291 bp        

>NTDB_id=439185 HG567_RS03395 WP_021176075.1 738767..739057(-) (comB2) [Helicobacter pylori strain PUNO-003]
ATGAAAAAATTAAGACATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCACTTTTATTACAAGCGGATATAACTAC
CTTTTTTAATAGCATTGAGCAACAACTCCAAAGCCCTACAGGTAAGGGCATTTTAATGATCATATTCATTGCTATTGGTA
TTTTTGTGTGGAAAAACTTAGATAGATGGAAAGAAATCTTATTAACTATTTTAGGAGTTGTTTTAGGAACGCTGATATTT
TTTAAAGCCCCAGCCTTAGCTCAATGGTTTATGACTAGTGTTGGTAACTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

59.77

90.625

0.542