Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HG567_RS03390 Genome accession   NZ_CP051500
Coordinates   738494..738757 (-) Length   87 a.a.
NCBI ID   WP_001177721.1    Uniprot ID   B3VT61
Organism   Helicobacter pylori strain PUNO-003     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 733494..743757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG567_RS03375 (HG567_03360) - 734387..735553 (-) 1167 WP_202163995.1 VirB8/TrbF family protein -
  HG567_RS07760 - 735546..735680 (-) 135 WP_237393069.1 type IV secretion system protein VirB7 -
  HG567_RS03380 (HG567_03365) - 735682..738246 (-) 2565 WP_202163996.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  HG567_RS03385 (HG567_03370) - 738246..738482 (-) 237 WP_202140151.1 hypothetical protein -
  HG567_RS03390 (HG567_03375) comB3 738494..738757 (-) 264 WP_001177721.1 hypothetical protein Machinery gene
  HG567_RS03395 (HG567_03380) comB2 738767..739057 (-) 291 WP_021176075.1 TrbC/VirB2 family protein Machinery gene
  HG567_RS03400 (HG567_03385) - 739054..739533 (-) 480 WP_165508556.1 hypothetical protein -
  HG567_RS03405 (HG567_03390) - 739530..739754 (-) 225 WP_202140153.1 hypothetical protein -
  HG567_RS03410 (HG567_03395) - 739757..740545 (-) 789 WP_202163997.1 integrase -
  HG567_RS03415 (HG567_03400) - 740733..742133 (+) 1401 WP_202140154.1 hypothetical protein -
  HG567_RS03420 (HG567_03405) - 742185..742462 (+) 278 Protein_682 hypothetical protein -
  HG567_RS03425 (HG567_03410) - 742464..743726 (+) 1263 WP_202140155.1 P-type conjugative transfer protein TrbL -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9946.74 Da        Isoelectric Point: 5.7206

>NTDB_id=439184 HG567_RS03390 WP_001177721.1 738494..738757(-) (comB3) [Helicobacter pylori strain PUNO-003]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSSFVPFVMTPWLDILNSLMLYACFLLVFSIAEFFDEDISDILIAHSKIKT
KSNSFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=439184 HG567_RS03390 WP_001177721.1 738494..738757(-) (comB3) [Helicobacter pylori strain PUNO-003]
ATGCAATTAGTCGGTATTTCAGTTTCTAATCTCAAAGAAATCAGTTCCAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTGCTCTCAAGTTTTGTGCCATTTGTAATGACACCTTGGCTAGATATATTGAACTCTCTTATGCTGTATGCGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTTTTTGATGAAGATATAAGCGACATTTTAATCGCTCATTCCAAGATTAAAACC
AAATCTAATTCATTTTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B3VT61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

58.621

100

0.586