Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   HG567_RS03365 Genome accession   NZ_CP051500
Coordinates   731566..732765 (-) Length   399 a.a.
NCBI ID   WP_202163993.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-003     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 729560..731340 731566..732765 flank 226


Gene organization within MGE regions


Location: 729560..732765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG567_RS03350 (HG567_03335) tnpA 729560..729988 (-) 429 WP_001878871.1 IS200/IS605 family transposase -
  HG567_RS03355 (HG567_03340) - 730057..731340 (+) 1284 WP_202163992.1 RNA-guided endonuclease TnpB family protein -
  HG567_RS03360 (HG567_03345) - 731358..731582 (-) 225 Protein_669 collagen-like protein -
  HG567_RS03365 (HG567_03350) comB10 731566..732765 (-) 1200 WP_202163993.1 DNA type IV secretion system protein ComB10 Machinery gene

Sequence

Protein


Download         Length: 399 a.a.        Molecular weight: 44592.17 Da        Isoelectric Point: 9.9916

>NTDB_id=439183 HG567_RS03365 WP_202163993.1 731566..732765(-) (comB10) [Helicobacter pylori strain PUNO-003]
MNKSLFKKIGLVIGGFGVLMALGLLANKGSNNNNKEEIFQTSESKFPLSDYFFEEVKEEPKKEESPKTTTTPQPTAPTTA
NVSTNPIITDYSHLNNNLNKQHNTLTHLQQVLQSPPKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFTNL
KYKDIGTNEHKLLRTITADRMIPAFLITPINSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNDNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANNQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLITTKEEVNNEEEI

Nucleotide


Download         Length: 1200 bp        

>NTDB_id=439183 HG567_RS03365 WP_202163993.1 731566..732765(-) (comB10) [Helicobacter pylori strain PUNO-003]
ATGAATAAATCCTTGTTTAAAAAGATAGGCTTAGTTATAGGGGGCTTTGGCGTTTTAATGGCATTAGGACTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAACAAGCGAGAGTAAATTCCCCCTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCTAAAAAAGAAGAAAGCCCCAAAACAACAACCACGCCACAACCTACAGCTCCAACTACTGCT
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAACAATCTAAACAAGCAACATAACACCCTTACGCA
TTTACAACAAGTTTTACAAAGCCCCCCTAAAATAAAGCCTAAACCAAAACATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCCTTAGAGCCAACTAAACCAGCTACTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTACTAATTTA
AAATATAAAGACATTGGCACTAATGAGCATAAGCTCTTAAGAACTATAACCGCTGACAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAACTCTCAAATTGCTGGAAAAGTAACCGCTCAAGTAGAGAGCGATATTTTTGCCTCTATGGGTAGAGCGG
TGCTAATCCCTAAAGGCTCTAAGGTTATAGGCTATTACAACAACGATAATCAAATCGGACAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATCAATATCATGCTCACTAATGCAAGAGGGGCTGATGTGAAAGGCTATAATGG
CTTAGTAGGCAAATACATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATAACCAAAACAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTATTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTCATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATTTTTATCCCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCCCTAATCACAACAAAAGAGGAAGTTAACAATGAAGAAGAAATCTAA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(175-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

53.149

99.499

0.529