Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HG568_RS06490 Genome accession   NZ_CP051499
Coordinates   1365020..1366333 (-) Length   437 a.a.
NCBI ID   WP_202167438.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-004     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1360020..1371333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG568_RS06460 (HG568_06450) nadC 1360483..1361304 (-) 822 WP_202167433.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HG568_RS06465 (HG568_06455) nadA 1361304..1362314 (-) 1011 WP_202167434.1 quinolinate synthase NadA -
  HG568_RS06470 (HG568_06460) - 1362304..1363107 (-) 804 WP_202167435.1 phosphatidylserine decarboxylase -
  HG568_RS06475 (HG568_06465) - 1363104..1363607 (-) 504 WP_202167436.1 helix-turn-helix domain-containing protein -
  HG568_RS06480 (HG568_06470) - 1363620..1364114 (-) 495 WP_180510131.1 hypothetical protein -
  HG568_RS06485 (HG568_06475) mqnP 1364107..1364991 (-) 885 WP_202167437.1 menaquinone biosynthesis prenyltransferase MqnP -
  HG568_RS06490 (HG568_06480) comEC/comE3 1365020..1366333 (-) 1314 WP_202167438.1 ComEC/Rec2 family competence protein Machinery gene
  HG568_RS06495 (HG568_06485) - 1366330..1367790 (-) 1461 WP_202167439.1 replicative DNA helicase -
  HG568_RS06500 (HG568_06490) - 1367801..1369195 (-) 1395 WP_202167440.1 NAD(P)H-hydrate dehydratase -
  HG568_RS06505 (HG568_06495) crdS 1369198..1370400 (-) 1203 WP_202168111.1 copper-sensing histidine kinase CrdS -
  HG568_RS06510 (HG568_06500) crdR 1370366..1371007 (-) 642 WP_075711046.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50220.21 Da        Isoelectric Point: 9.8368

>NTDB_id=439166 HG568_RS06490 WP_202167438.1 1365020..1366333(-) (comEC/comE3) [Helicobacter pylori strain PUNO-004]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLVLNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSTHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
ALIFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDPILNMPLTIPTISVFSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=439166 HG568_RS06490 WP_202167438.1 1365020..1366333(-) (comEC/comE3) [Helicobacter pylori strain PUNO-004]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATATTTGCTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGTGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCACTTCATTGATAGCACTCATTCAAGCGCTTTAGTGGGTAATTTATACCGCGCATTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGATTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAATTTTTTTGAACATGCTCATCATTGCACATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTAGATCCCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTGTGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947