Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HG569_RS06705 Genome accession   NZ_CP051498
Coordinates   1399908..1401221 (-) Length   437 a.a.
NCBI ID   WP_202272449.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-006     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1394908..1406221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG569_RS06675 (HG569_06675) nadC 1395371..1396192 (-) 822 WP_202272441.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HG569_RS06680 (HG569_06680) nadA 1396192..1397202 (-) 1011 WP_202272443.1 quinolinate synthase NadA -
  HG569_RS06685 (HG569_06685) - 1397192..1397995 (-) 804 WP_202272445.1 phosphatidylserine decarboxylase -
  HG569_RS06690 (HG569_06690) - 1397992..1398495 (-) 504 WP_000953077.1 hypothetical protein -
  HG569_RS06695 (HG569_06695) - 1398508..1399002 (-) 495 WP_202272447.1 hypothetical protein -
  HG569_RS06700 (HG569_06700) mqnP 1398995..1399879 (-) 885 WP_000913954.1 menaquinone biosynthesis prenyltransferase MqnP -
  HG569_RS06705 (HG569_06705) comEC/comE3 1399908..1401221 (-) 1314 WP_202272449.1 ComEC/Rec2 family competence protein Machinery gene
  HG569_RS06710 (HG569_06710) - 1401218..1402678 (-) 1461 WP_202272451.1 replicative DNA helicase -
  HG569_RS06715 (HG569_06715) - 1402690..1404084 (-) 1395 WP_202272453.1 NAD(P)H-hydrate dehydratase -
  HG569_RS06720 (HG569_06720) crdS 1404087..1405289 (-) 1203 WP_202273202.1 copper-sensing histidine kinase CrdS -
  HG569_RS06725 (HG569_06725) crdR 1405255..1405896 (-) 642 WP_202272455.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50165.19 Da        Isoelectric Point: 9.8918

>NTDB_id=439146 HG569_RS06705 WP_202272449.1 1399908..1401221(-) (comEC/comE3) [Helicobacter pylori strain PUNO-006]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
ALIFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDPILNMPLTIPTISISSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=439146 HG569_RS06705 WP_202272449.1 1399908..1401221(-) (comEC/comE3) [Helicobacter pylori strain PUNO-006]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATATTTGCTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTACTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGGAATTTATACCGCGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTGGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCCTAAGT
GCGCTAATTTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTAGATCCCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCAATCTCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947