Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HG569_RS01655 Genome accession   NZ_CP051498
Coordinates   339252..339656 (+) Length   134 a.a.
NCBI ID   WP_000599160.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 334252..344656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG569_RS01620 (HG569_01620) - 334433..335371 (-) 939 WP_202272865.1 tetraacyldisaccharide 4'-kinase -
  HG569_RS01625 (HG569_01625) - 335368..336150 (-) 783 WP_202272866.1 NAD+ synthase -
  HG569_RS01635 (HG569_01635) ilvC 336396..337388 (+) 993 WP_202272867.1 ketol-acid reductoisomerase -
  HG569_RS01640 (HG569_01640) minD 337407..338213 (+) 807 WP_202272868.1 septum site-determining protein MinD -
  HG569_RS01645 (HG569_01645) minE 338210..338443 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  HG569_RS01650 (HG569_01650) dprA 338455..339255 (+) 801 WP_202272869.1 DNA-processing protein DprA Machinery gene
  HG569_RS01655 (HG569_01655) dprB 339252..339656 (+) 405 WP_000599160.1 Holliday junction resolvase RuvX Machinery gene
  HG569_RS01660 (HG569_01660) - 339788..340162 (+) 375 WP_202272870.1 tetratricopeptide repeat protein -
  HG569_RS01665 (HG569_01665) - 340349..340687 (+) 339 WP_202167801.1 hypothetical protein -
  HG569_RS01670 (HG569_01670) - 340671..341231 (+) 561 WP_202167802.1 hypothetical protein -
  HG569_RS01675 (HG569_01675) - 341242..341580 (+) 339 WP_202167803.1 lysozyme -
  HG569_RS07910 - 341540..341821 (+) 282 WP_237418700.1 hypothetical protein -
  HG569_RS01685 (HG569_01685) - 342188..342331 (+) 144 Protein_329 DUF1294 domain-containing protein -
  HG569_RS01690 (HG569_01690) - 342331..343116 (+) 786 WP_202272871.1 hypothetical protein -
  HG569_RS01695 (HG569_01695) - 343106..344200 (+) 1095 WP_202272872.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15265.75 Da        Isoelectric Point: 9.1725

>NTDB_id=439140 HG569_RS01655 WP_000599160.1 339252..339656(+) (dprB) [Helicobacter pylori strain PUNO-006]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=439140 HG569_RS01655 WP_000599160.1 339252..339656(+) (dprB) [Helicobacter pylori strain PUNO-006]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATCAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

97.744

99.254

0.97