Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HG570_RS06505 Genome accession   NZ_CP051497
Coordinates   1376782..1378095 (-) Length   437 a.a.
NCBI ID   WP_202141580.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-007     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1371782..1383095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG570_RS06475 (HG570_06475) nadC 1372245..1373066 (-) 822 WP_202141575.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HG570_RS06480 (HG570_06480) nadA 1373066..1374076 (-) 1011 WP_202141576.1 quinolinate synthase NadA -
  HG570_RS06485 (HG570_06485) - 1374066..1374869 (-) 804 WP_202141577.1 phosphatidylserine decarboxylase -
  HG570_RS06490 (HG570_06490) - 1374866..1375369 (-) 504 WP_000953077.1 hypothetical protein -
  HG570_RS06495 (HG570_06495) - 1375382..1375876 (-) 495 WP_202141578.1 hypothetical protein -
  HG570_RS06500 (HG570_06500) mqnP 1375869..1376753 (-) 885 WP_202141579.1 menaquinone biosynthesis prenyltransferase MqnP -
  HG570_RS06505 (HG570_06505) comEC/comE3 1376782..1378095 (-) 1314 WP_202141580.1 ComEC/Rec2 family competence protein Machinery gene
  HG570_RS06510 (HG570_06510) - 1378092..1379552 (-) 1461 WP_202141581.1 replicative DNA helicase -
  HG570_RS06515 (HG570_06515) - 1379563..1380957 (-) 1395 WP_202141582.1 NAD(P)H-hydrate dehydratase -
  HG570_RS06520 (HG570_06520) crdS 1380960..1382162 (-) 1203 WP_202142507.1 copper-sensing histidine kinase CrdS -
  HG570_RS06525 (HG570_06525) crdR 1382128..1382769 (-) 642 WP_075711046.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50057.98 Da        Isoelectric Point: 9.8368

>NTDB_id=439125 HG570_RS06505 WP_202141580.1 1376782..1378095(-) (comEC/comE3) [Helicobacter pylori strain PUNO-007]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDLGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGARLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDPILNMPLTIPTISISSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIIG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=439125 HG570_RS06505 WP_202141580.1 1376782..1378095(-) (comEC/comE3) [Helicobacter pylori strain PUNO-007]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATATTTGCTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTAGAGTCTTTAAGATCATGCTTTTTCCAAACTTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTATACCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATCTAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGCAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
TTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGATTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGC
GTGCTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTAGATCCCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCAATCTCTTCGCCTTTGTGGCTTTTAGGGGCACATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGCTGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTATAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.822

100

0.938