Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HG571_RS06735 Genome accession   NZ_CP051496
Coordinates   1404817..1406130 (-) Length   437 a.a.
NCBI ID   WP_202140601.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-008     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1404817..1424450 1404817..1406130 within 0


Gene organization within MGE regions


Location: 1404817..1424450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG571_RS06735 (HG571_06740) comEC/comE3 1404817..1406130 (-) 1314 WP_202140601.1 ComEC/Rec2 family competence protein Machinery gene
  HG571_RS06740 (HG571_06745) - 1406127..1407587 (-) 1461 WP_202140602.1 replicative DNA helicase -
  HG571_RS06745 (HG571_06750) - 1407598..1408992 (-) 1395 WP_202140603.1 NAD(P)H-hydrate dehydratase -
  HG571_RS06750 (HG571_06755) crdS 1408995..1410197 (-) 1203 WP_202141261.1 copper-sensing histidine kinase CrdS -
  HG571_RS06755 (HG571_06760) crdR 1410163..1410804 (-) 642 WP_202140604.1 copper response regulator transcription factor CrdR -
  HG571_RS06760 (HG571_06765) - 1410893..1412163 (-) 1271 Protein_1331 restriction endonuclease subunit R -
  HG571_RS06765 (HG571_06770) - 1412179..1412955 (-) 777 WP_237392992.1 site-specific DNA-methyltransferase -
  HG571_RS06770 (HG571_06775) - 1412948..1413811 (-) 864 WP_001024653.1 site-specific DNA-methyltransferase -
  HG571_RS06775 (HG571_06780) - 1414054..1416492 (+) 2439 WP_202140606.1 site-specific DNA-methyltransferase -
  HG571_RS06780 (HG571_06785) - 1416587..1417429 (+) 843 WP_000446574.1 EcoRV family type II restriction endonuclease -
  HG571_RS06785 (HG571_06790) - 1417429..1418322 (+) 894 WP_202140607.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  HG571_RS06790 (HG571_06795) - 1418294..1420732 (+) 2439 WP_202140606.1 site-specific DNA-methyltransferase -
  HG571_RS06795 (HG571_06800) - 1420742..1423654 (+) 2913 WP_202140608.1 DEAD/DEAH box helicase family protein -
  HG571_RS06800 (HG571_06805) mreC 1423704..1424450 (-) 747 WP_202140609.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50146.15 Da        Isoelectric Point: 9.8368

>NTDB_id=439105 HG571_RS06735 WP_202140601.1 1404817..1406130(-) (comEC/comE3) [Helicobacter pylori strain PUNO-008]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKASSFLMRSFQVISLS
ALIFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDPILNMPLTIPTISISSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=439105 HG571_RS06735 WP_202140601.1 1404817..1406130(-) (comEC/comE3) [Helicobacter pylori strain PUNO-008]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAGATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCACTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGTGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCATTTATTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATTGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAGCCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAATTTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGCTAGATCCCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCAATCTCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95