Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HG571_RS02350 Genome accession   NZ_CP051496
Coordinates   487729..488019 (-) Length   96 a.a.
NCBI ID   WP_021176075.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-008     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 482729..493019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG571_RS02330 (HG571_02335) - 483349..484515 (-) 1167 WP_202141024.1 VirB8/TrbF family protein -
  HG571_RS07940 - 484508..484642 (-) 135 WP_202147098.1 type IV secretion system protein VirB7 -
  HG571_RS02335 (HG571_02340) - 484644..487208 (-) 2565 WP_165508558.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  HG571_RS02340 (HG571_02345) - 487208..487444 (-) 237 WP_202141025.1 hypothetical protein -
  HG571_RS02345 (HG571_02350) comB3 487456..487719 (-) 264 WP_001177721.1 hypothetical protein Machinery gene
  HG571_RS02350 (HG571_02355) comB2 487729..488019 (-) 291 WP_021176075.1 TrbC/VirB2 family protein Machinery gene
  HG571_RS02355 (HG571_02360) - 488016..488495 (-) 480 WP_202141026.1 hypothetical protein -
  HG571_RS02360 (HG571_02365) - 488492..488716 (-) 225 WP_000188955.1 hypothetical protein -
  HG571_RS02365 (HG571_02370) - 488719..489507 (-) 789 WP_202141027.1 integrase -
  HG571_RS02370 (HG571_02375) - 489562..490098 (+) 537 Protein_470 DNA adenine methylase -
  HG571_RS02375 (HG571_02380) - 490101..490726 (+) 626 Protein_471 GIY-YIG nuclease family protein -
  HG571_RS02380 (HG571_02385) - 490817..491872 (+) 1056 WP_202141028.1 DNA cytosine methyltransferase -
  HG571_RS02385 (HG571_02390) - 491865..492334 (+) 470 Protein_473 type II restriction endonuclease -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10940.26 Da        Isoelectric Point: 11.1589

>NTDB_id=439100 HG571_RS02350 WP_021176075.1 487729..488019(-) (comB2) [Helicobacter pylori strain PUNO-008]
MKKLRHFRKLIAFLGFSPLLLQADITTFFNSIEQQLQSPTGKGILMIIFIAIGIFVWKNLDRWKEILLTILGVVLGTLIF
FKAPALAQWFMTSVGN

Nucleotide


Download         Length: 291 bp        

>NTDB_id=439100 HG571_RS02350 WP_021176075.1 487729..488019(-) (comB2) [Helicobacter pylori strain PUNO-008]
ATGAAAAAATTAAGACATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCACTTTTATTACAAGCGGATATAACTAC
CTTTTTTAATAGCATTGAGCAACAACTCCAAAGCCCTACAGGTAAGGGCATTTTAATGATCATATTCATTGCTATTGGTA
TTTTTGTGTGGAAAAACTTAGATAGATGGAAAGAAATCTTATTAACTATTTTAGGAGTTGTTTTAGGAACGCTGATATTT
TTTAAAGCCCCAGCCTTAGCTCAATGGTTTATGACTAGTGTTGGTAACTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

59.77

90.625

0.542