Detailed information NTG0439076

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HG572_RS03345
• Genome accession: NZ_CP051495
• Coordinates: 729991..731190 (-)
• Length: 399 a.a.
• NCBI ID: WP_202140148.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain PUNO-009
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 724991..736190

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG572_RS03320 (HG572_03315)	-	725029..725547 (-)	519	WP_202140145.1	replication regulatory RepB family protein	-
HG572_RS03325 (HG572_03320)	-	725544..726488 (-)	945	WP_165530262.1	CpaF/VirB11 family protein	-
HG572_RS03330 (HG572_03325)	-	726493..726765 (-)	273	WP_180373640.1	hypothetical protein	-
HG572_RS03335 (HG572_03330)	-	726783..727754 (-)	972	WP_202140146.1	hypothetical protein	-
HG572_RS03340 (HG572_03335)	-	727767..730007 (-)	2241	WP_202140147.1	collagen-like protein	-
HG572_RS03345 (HG572_03340)	comB10	729991..731190 (-)	1200	WP_202140148.1	DNA type IV secretion system protein ComB10	Machinery gene
HG572_RS03350 (HG572_03345)	-	731187..732818 (-)	1632	WP_202140149.1	TrbG/VirB9 family P-type conjugative transfer protein	-
HG572_RS03355 (HG572_03350)	-	732815..733981 (-)	1167	WP_202140150.1	VirB8/TrbF family protein	-
HG572_RS03360 (HG572_03355)	-	733974..734108 (-)	135	WP_077654653.1	type IV secretion system protein VirB7	-

Sequence

Protein

• Length: 399 a.a.
• Molecular weight: 44556.18 Da
• Isoelectric Point: 10.0597

>NTDB_id=439076 HG572_RS03345 WP_202140148.1 729991..731190(-) (comB10) [Helicobacter pylori strain PUNO-009]
MNKSLLKKIGLVIGGFGVLMALGLLANKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKKEESPKTTTTPQPTAPTTA
NVSTNPIITDYSHLNNNLNRQHNTLTHLQQVLQSPPKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFTNL
KYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANNQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLITTKEEVNNEEEI

Nucleotide

• Length: 1200 bp

>NTDB_id=439076 HG572_RS03345 WP_202140148.1 729991..731190(-) (comB10) [Helicobacter pylori strain PUNO-009]
ATGAATAAATCCTTGCTTAAAAAGATAGGCTTAGTTATAGGGGGCTTTGGCGTTTTAATGGCATTAGGACTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGCGAGAGTAAATTCCCCCTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCTAAAAAAGAAGAAAGCCCCAAAACAACAACCACGCCACAACCTACAGCTCCAACTACTGCT
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAATAATCTAAACAGGCAACATAACACCCTTACGCA
TTTACAACAAGTTTTACAAAGCCCCCCTAAAATAAAGCCTAAACCAAAACATACTAAGGAACAATTAGAGTTTTTAAACA
CACGCCTTAAACCCTTAGAGCCAACTAAACCAGCTACTAAGCCTGAGACGGAATATGGTGTGGATAGTTTTACTAATTTA
AAATATAAAGACATTGGCACTAATGAGCATAAGCTCTTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCTCAAGTAGAGAGCGATATTTTTGCCTCTATGGGTAGAGCGG
TGCTAATCCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAATAACAATCAAATCGGACAATACCGCTTAAATATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATCAATATCATGCTCACTAATGCAAGAGGGGCTGATGTGAAAGGCTATAATGG
CTTAGTAGGCAAATACATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATAACCAAAACAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTATTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTCATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATTTTTATCCCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCCCTAATCACAACAAAAGAGGAAGTTAACAATGAAGAAGAAATCTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.652	99.499	0.534