Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HG572_RS01595 Genome accession   NZ_CP051495
Coordinates   332655..333059 (+) Length   134 a.a.
NCBI ID   WP_202139925.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 327655..338059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG572_RS01560 (HG572_01560) - 327834..328772 (-) 939 WP_202138218.1 tetraacyldisaccharide 4'-kinase -
  HG572_RS01565 (HG572_01565) - 328759..329550 (-) 792 WP_202139922.1 NAD+ synthase -
  HG572_RS01575 (HG572_01575) ilvC 329799..330791 (+) 993 WP_202139923.1 ketol-acid reductoisomerase -
  HG572_RS01580 (HG572_01580) minD 330815..331621 (+) 807 WP_001019051.1 septum site-determining protein MinD -
  HG572_RS01585 (HG572_01585) minE 331618..331851 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  HG572_RS01590 (HG572_01590) dprA 331858..332658 (+) 801 WP_202139924.1 DNA-processing protein DprA Machinery gene
  HG572_RS01595 (HG572_01595) dprB 332655..333059 (+) 405 WP_202139925.1 Holliday junction resolvase RuvX Machinery gene
  HG572_RS01600 (HG572_01600) - 333182..333532 (+) 351 WP_202139926.1 tetratricopeptide repeat protein -
  HG572_RS01605 (HG572_01605) - 333719..334057 (+) 339 WP_128004067.1 hypothetical protein -
  HG572_RS01610 (HG572_01610) - 334041..334643 (+) 603 WP_202139927.1 hypothetical protein -
  HG572_RS01615 (HG572_01615) - 334712..335593 (-) 882 WP_202139928.1 RluA family pseudouridine synthase -
  HG572_RS01620 (HG572_01620) recJ 335593..337143 (-) 1551 WP_202139929.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15150.48 Da        Isoelectric Point: 8.2822

>NTDB_id=439074 HG572_RS01595 WP_202139925.1 332655..333059(+) (dprB) [Helicobacter pylori strain PUNO-009]
MILACDVGLKRIGIAALLNGVVLPLEAILRHNKNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSIEAYDNLEHLGRKNKRLATKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=439074 HG572_RS01595 WP_202139925.1 332655..333059(+) (dprB) [Helicobacter pylori strain PUNO-009]
ATGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGCACTTTTAAACGGCGTTGTCTTGCCTTTAGAAGC
GATTTTACGCCACAACAAAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGAGAAAAAAATATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACGAACGCACGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCTTATGACAATTTGGAGCATTTGGGTAGGAAAAATAAGCGGCT
CGCTACCAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.03

100

0.94