Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HG573_RS06800 Genome accession   NZ_CP051494
Coordinates   1443391..1444704 (-) Length   437 a.a.
NCBI ID   WP_202147205.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-010     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1438391..1449704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG573_RS06770 (HG573_06775) nadC 1438854..1439675 (-) 822 WP_202147202.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HG573_RS06775 (HG573_06780) nadA 1439675..1440685 (-) 1011 WP_202147203.1 quinolinate synthase NadA -
  HG573_RS06780 (HG573_06785) - 1440675..1441478 (-) 804 WP_202147204.1 phosphatidylserine decarboxylase -
  HG573_RS06785 (HG573_06790) - 1441472..1441978 (-) 507 WP_000953118.1 hypothetical protein -
  HG573_RS06790 (HG573_06795) - 1441991..1442485 (-) 495 WP_001883488.1 hypothetical protein -
  HG573_RS06795 (HG573_06800) mqnP 1442478..1443320 (-) 843 WP_232256842.1 menaquinone biosynthesis prenyltransferase MqnP -
  HG573_RS06800 (HG573_06805) comEC/comE3 1443391..1444704 (-) 1314 WP_202147205.1 ComEC/Rec2 family competence protein Machinery gene
  HG573_RS06805 (HG573_06810) - 1444701..1446161 (-) 1461 WP_202147206.1 replicative DNA helicase -
  HG573_RS06810 (HG573_06815) - 1446172..1447566 (-) 1395 WP_202147207.1 NAD(P)H-hydrate dehydratase -
  HG573_RS06815 (HG573_06820) crdS 1447569..1448771 (-) 1203 WP_202147841.1 copper-sensing histidine kinase CrdS -
  HG573_RS06820 (HG573_06825) crdR 1448737..1449378 (-) 642 WP_202147208.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50147.02 Da        Isoelectric Point: 9.8081

>NTDB_id=439059 HG573_RS06800 WP_202147205.1 1443391..1444704(-) (comEC/comE3) [Helicobacter pylori strain PUNO-010]
MKDKTFQGAFDLLSTPKEYSWCGVILSLLLAINLYLEYLNHQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHLRHFIDSAHSNALVGNLYRALFIGDNL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVKILSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKDSSFLMRSFQAIALS
VLVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHILSMPLTIPTISVFSPLWLLGAHLFLT
IVSARFFKVYLSMNVLSMGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=439059 HG573_RS06800 WP_202147205.1 1443391..1444704(-) (comEC/comE3) [Helicobacter pylori strain PUNO-010]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGATTTGCTTTCAACCCCCAAAGAATACTCATGGTGTGGGGTTATTTTAAG
CCTTTTGTTGGCGATCAACCTTTATTTAGAATACTTGAATCACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAACTCCAATCAAAGGGTATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAGATCAAGCCTTGTTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
TGCGCCATTTCATTGACAGCGCTCACTCCAACGCTTTGGTGGGCAATTTGTATCGAGCGTTATTCATAGGGGATAATTTG
AATAAGGATTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTCTTGGTGTGGGTTTTTTTGCTGGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAAGATCTTAAGTTTTAAACTTTTGGTTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAATTTTTTTTAAAGATTCTTCTTTTTTAATGCGATCGTTTCAAGCGATCGCTTTAAGC
GTGTTAGTGTTTTTGAACATGCTCATTGTTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGCTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTATTGGATCATA
TTCTAAGCATGCCTTTAACCATCCCCACGATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTGTGAGTGCGCGTTTTTTTAAGGTTTATTTAAGCATGAATGTTTTGAGTATGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTCAATTGTGGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.593

100

0.936