Detailed information NTG0439058

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HG573_RS05780
• Genome accession: NZ_CP051494
• Coordinates: 1239544..1240743 (+)
• Length: 399 a.a.
• NCBI ID: WP_165540697.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain PUNO-010
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1234544..1245743

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG573_RS05765 (HG573_05770)	-	1236626..1236760 (+)	135	WP_202147098.1	type IV secretion system protein VirB7	-
HG573_RS05770 (HG573_05775)	-	1236753..1237919 (+)	1167	WP_202147099.1	VirB8/TrbF family protein	-
HG573_RS05775 (HG573_05780)	-	1237916..1239547 (+)	1632	WP_202147100.1	TrbG/VirB9 family P-type conjugative transfer protein	-
HG573_RS05780 (HG573_05785)	comB10	1239544..1240743 (+)	1200	WP_165540697.1	DNA type IV secretion system protein ComB10	Machinery gene
HG573_RS05785 (HG573_05790)	-	1240727..1242961 (+)	2235	WP_202147101.1	collagen-like protein	-
HG573_RS05790 (HG573_05795)	-	1242974..1243945 (+)	972	WP_202147102.1	hypothetical protein	-
HG573_RS05795 (HG573_05800)	-	1243963..1244235 (+)	273	WP_180373640.1	hypothetical protein	-
HG573_RS05800 (HG573_05805)	-	1244240..1245184 (+)	945	WP_165530262.1	CpaF/VirB11 family protein	-
HG573_RS05805 (HG573_05810)	-	1245181..1245699 (+)	519	WP_202147103.1	replication regulatory RepB family protein	-

Sequence

Protein

• Length: 399 a.a.
• Molecular weight: 44529.15 Da
• Isoelectric Point: 9.9916

>NTDB_id=439058 HG573_RS05780 WP_165540697.1 1239544..1240743(+) (comB10) [Helicobacter pylori strain PUNO-010]
MNKSLLKKIGLVIGGFGVLMALGLLANKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKKEESPKTTTTPQPTAPTTA
NVSTNPIITDYSHLNNNLNKQHNTLTHLQQVLQSPPKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFTNL
KYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNDNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANNQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLITTKEEVNNEEEI

Nucleotide

• Length: 1200 bp

>NTDB_id=439058 HG573_RS05780 WP_165540697.1 1239544..1240743(+) (comB10) [Helicobacter pylori strain PUNO-010]
ATGAATAAATCCTTGCTTAAAAAGATAGGCTTAGTTATAGGGGGCTTTGGCGTTTTAATGGCATTAGGACTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGCGAGAGTAAATTCCCCCTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCTAAAAAAGAAGAAAGCCCCAAAACAACAACCACGCCACAACCTACAGCTCCAACTACTGCT
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAACAATCTAAACAAGCAACATAACACCCTTACGCA
TTTACAACAAGTTTTACAAAGCCCCCCTAAAATAAAGCCTAAACCAAAACATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATATGGTGTGGATAGTTTTACTAATTTA
AAATATAAAGACATTGGCACTAATGAGCATAAGCTCTTAAGAACCATAACCGCTGATAGAATGATACCAGCCTTTTTGAT
CACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCTCAAGTAGAGAGCGATATTTTTGCCTCTATGGGTAGAGCGG
TGCTAATCCCTAAAGGCTCTAAGGTTATAGGCTATTACAACAACGATAATCAAATCGGACAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGTATCAATATCATGCTCACTAATGCAAGAGGGGCTGATGTGAAAGGCTATAATGG
CTTAGTAGGCAAATACATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATAACCAAAACAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTATTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTCATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATTTTTATCCCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCCCTAATCACAACAAAAGAGGAAGTTAACAATGAAGAAGAAATCTAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.401	99.499	0.531