Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HG573_RS01765 Genome accession   NZ_CP051494
Coordinates   367258..367662 (+) Length   134 a.a.
NCBI ID   WP_202147547.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-010     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 362258..372662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG573_RS01730 (HG573_01730) - 362437..363375 (-) 939 WP_202147542.1 tetraacyldisaccharide 4'-kinase -
  HG573_RS01735 (HG573_01735) - 363372..364154 (-) 783 WP_202147543.1 NAD+ synthase -
  HG573_RS01745 (HG573_01745) ilvC 364401..365393 (+) 993 WP_202147544.1 ketol-acid reductoisomerase -
  HG573_RS01750 (HG573_01750) minD 365418..366224 (+) 807 WP_202147545.1 septum site-determining protein MinD -
  HG573_RS01755 (HG573_01755) minE 366221..366454 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  HG573_RS01760 (HG573_01760) dprA 366461..367261 (+) 801 WP_202147546.1 DNA-processing protein DprA Machinery gene
  HG573_RS01765 (HG573_01765) dprB 367258..367662 (+) 405 WP_202147547.1 Holliday junction resolvase RuvX Machinery gene
  HG573_RS07960 - 367699..367860 (+) 162 WP_237392923.1 hypothetical protein -
  HG573_RS01770 (HG573_01770) - 367973..368587 (+) 615 WP_237392924.1 tetratricopeptide repeat protein -
  HG573_RS01775 (HG573_01775) - 368714..369052 (+) 339 WP_000699893.1 hypothetical protein -
  HG573_RS01780 (HG573_01780) - 369036..369596 (+) 561 WP_156572373.1 hypothetical protein -
  HG573_RS01785 (HG573_01785) - 369742..370623 (-) 882 WP_187931754.1 RluA family pseudouridine synthase -
  HG573_RS01790 (HG573_01790) recJ 370623..372173 (-) 1551 WP_202147548.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15276.68 Da        Isoelectric Point: 8.2682

>NTDB_id=439051 HG573_RS01765 WP_202147547.1 367258..367662(+) (dprB) [Helicobacter pylori strain PUNO-010]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGRKNKWLATKDGRLDSLSACRILERYCQQVLKKY

Nucleotide


Download         Length: 405 bp        

>NTDB_id=439051 HG573_RS01765 WP_202147547.1 367258..367662(+) (dprB) [Helicobacter pylori strain PUNO-010]
ATGATTTTAGCATGCGATGTGGGGCTAAAACGCATTGGAATCGCTGCGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGTTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCACGCATTGAGCATTTCATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCCAGTATAGAAGCTTATGAAAATTTAGAGCATTTAGGTAGGAAAAACAAGTGGCT
CGCTACCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATTTTAGAGCGCTATTGCCAACAGGTTTTAAAAAAGT
ATTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.03

100

0.94