Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HG579_RS07510 Genome accession   NZ_CP051493
Coordinates   1596372..1596947 (-) Length   191 a.a.
NCBI ID   WP_077652124.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-006     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1591372..1601947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG579_RS07500 (HG579_07495) - 1593111..1594307 (-) 1197 WP_202133808.1 restriction endonuclease subunit S -
  HG579_RS07505 (HG579_07500) - 1594304..1596340 (-) 2037 WP_202133809.1 N-6 DNA methylase -
  HG579_RS07510 (HG579_07505) comFC 1596372..1596947 (-) 576 WP_077652124.1 ComF family protein Machinery gene
  HG579_RS07515 (HG579_07510) tmk 1596935..1597510 (-) 576 WP_202133810.1 dTMP kinase -
  HG579_RS07520 (HG579_07515) coaD 1597512..1597985 (-) 474 WP_038418181.1 pantetheine-phosphate adenylyltransferase -
  HG579_RS07525 (HG579_07520) - 1597985..1598548 (-) 564 WP_000780097.1 UbiX family flavin prenyltransferase -
  HG579_RS07530 (HG579_07525) flgA 1598558..1599214 (-) 657 WP_202133811.1 flagellar basal body P-ring formation chaperone FlgA -
  HG579_RS07535 (HG579_07530) uvrD 1599211..1601256 (-) 2046 WP_202133812.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21318.87 Da        Isoelectric Point: 8.8864

>NTDB_id=439038 HG579_RS07510 WP_077652124.1 1596372..1596947(-) (comFC) [Helicobacter pylori strain LIM-006]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEVEELIKSKYALIGSRILPLLSQKAGKEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=439038 HG579_RS07510 WP_077652124.1 1596372..1596947(-) (comFC) [Helicobacter pylori strain LIM-006]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAGTAGAAGAGCTCATTAAAAGCAAATACG
CACTAATTGGTTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCTGGCAAAGAATTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTGAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCAGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

96.335

100

0.963