Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HG579_RS07030 Genome accession   NZ_CP051493
Coordinates   1488632..1489945 (-) Length   437 a.a.
NCBI ID   WP_202133759.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-006     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1483632..1494945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG579_RS07000 (HG579_06995) nadC 1484095..1484916 (-) 822 WP_202133755.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HG579_RS07005 (HG579_07000) nadA 1484916..1485926 (-) 1011 WP_202133756.1 quinolinate synthase NadA -
  HG579_RS07010 (HG579_07005) - 1485916..1486719 (-) 804 WP_202133757.1 phosphatidylserine decarboxylase -
  HG579_RS07015 (HG579_07010) - 1486713..1487219 (-) 507 WP_000953090.1 hypothetical protein -
  HG579_RS07020 (HG579_07015) - 1487232..1487726 (-) 495 WP_183033718.1 hypothetical protein -
  HG579_RS07025 (HG579_07020) mqnP 1487719..1488561 (-) 843 WP_237392839.1 menaquinone biosynthesis prenyltransferase MqnP -
  HG579_RS07030 (HG579_07025) comEC/comE3 1488632..1489945 (-) 1314 WP_202133759.1 ComEC/Rec2 family competence protein Machinery gene
  HG579_RS07035 (HG579_07030) - 1489942..1491408 (-) 1467 WP_202133760.1 replicative DNA helicase -
  HG579_RS07040 (HG579_07035) - 1491419..1492813 (-) 1395 WP_202133761.1 NAD(P)H-hydrate dehydratase -
  HG579_RS07045 (HG579_07040) crdS 1492816..1494018 (-) 1203 WP_202134423.1 copper-sensing histidine kinase CrdS -
  HG579_RS07050 (HG579_07045) crdR 1493984..1494625 (-) 642 WP_202133762.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50028.01 Da        Isoelectric Point: 9.8315

>NTDB_id=439036 HG579_RS07030 WP_202133759.1 1488632..1489945(-) (comEC/comE3) [Helicobacter pylori strain LIM-006]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSMSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKTSSFLARSFQAISLS
VLVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDNVLSMPLTIPTISVSSPLWLLGVHLLLT
ILSARSFKVYLSMNVLSVGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=439036 HG579_RS07030 WP_202133759.1 1488632..1489945(-) (comEC/comE3) [Helicobacter pylori strain LIM-006]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTATACCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
AAGCATGAGCGTGTATTTTCTTTTTTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTGTTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTACATCT
TTTTGTTTTTAAAACACACTCAAATTTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAAGCCATAAGCTTAAGC
GTGCTGGTGTTTTTGAACATGCTCATTGTTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTGTTGGATAATG
TTCTAAGCATGCCTTTAACAATCCCTACGATTTCGGTTTCTTCACCCTTATGGCTTTTAGGGGTGCATTTGCTTTTAACG
ATTTTGAGTGCGCGTTCTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGTGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947